| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 1903072 | 10 (0.080) | 133 (1.130) | 53/170 | 0.3 | 93.0% | intergenic (‑49/‑110) | mgrB/yobH | PhoP/PhoQ regulator MgrB/YobH family protein |
| ? | NZ_CP009273 | = 2096424 | NA (NA) | intergenic (‑68/+3) | BW25113_RS10605/wbbL | IS5‑like element IS5 family transposase/N‑acetylglucosaminyl‑diphospho‑decaprenol L‑rhamnosyltransferase WbbL | |||||
Only 100 of 269 total aligned reads displayed.
AACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCTTGCTTCAGCGCATATTGCCGCTACGATTAAGCGAAC > NZ_CP009273/1902983‑1903160 | ttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAg > 2:2618448‑M2/87‑90 (MQ=255) accacGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGgga < 2:2923247‑M1/90‑4 (MQ=255) gagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTAAAc < 2:2364733‑M2/10‑1 (MQ=255) gagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTAAAc > 2:2970353‑M2/81‑90 (MQ=255) acGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaagg < 2:1207477‑M1/90‑7 (MQ=255) acGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaagg < 1:2237852‑M1/90‑7 (MQ=255) acGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaagg > 1:152357‑M1/1‑84 (MQ=255) acGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaagg > 2:3344646‑M1/1‑84 (MQ=255) agaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTAAACa < 2:662612‑M2/11‑1 (MQ=255) agaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTAAACa < 1:2376781‑M2/11‑1 (MQ=255) gaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTAAACAg > 1:1078952‑M2/79‑90 (MQ=255) gaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTAAACAg > 2:1408450‑M2/79‑90 (MQ=255) gaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTAAACAg < 1:2898986‑M2/12‑1 (MQ=255) gaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTAAACAg < 2:1978710‑M2/12‑1 (MQ=255) gaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTAAACAg > 2:2920540‑M2/79‑90 (MQ=255) aaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTAAACAgcgc < 1:1031709‑M2/15‑1 (MQ=255) ccAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaac < 1:917202‑M1/90‑14 (MQ=255) ccAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaac < 1:3352347‑M1/90‑14 (MQ=255) cAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaaca < 1:1131871‑M1/90‑15 (MQ=255) gAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaag < 2:1351553‑M1/90‑17 (MQ=255) aaCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagt < 1:2499209‑M1/90‑18 (MQ=255) aaCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagt < 2:1814198‑M1/90‑18 (MQ=255) aaCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagt < 1:111465‑M1/90‑18 (MQ=255) ggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttcccgcttattcgcaccttccTTAGTTAAACAGCGCCTAACTa < 2:2462269‑M2/22‑1 (MQ=255) gctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTAAACAGCGCCTAACTa < 1:1407473‑M2/22‑1 (MQ=255) aCCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccct < 2:2250647‑M1/90‑22 (MQ=255) aaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTAAACAGCGCCTAACTATGTc > 1:3090094‑M2/65‑90 (MQ=255) ccATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctga > 1:1946288‑M1/1‑67 (MQ=255) ccATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccct < 2:1581372‑M1/88‑22 (MQ=255) aacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgccccttccTTAGTTAAACAGCGCCTAACTATGTCg < 1:378102‑M2/27‑1 (MQ=255) cATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaac < 1:1432316‑M1/79‑14 (MQ=255) cATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaac > 2:1432316‑M1/1‑66 (MQ=255) aTCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgata < 2:548212‑M1/90‑26 (MQ=255) tCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgatat > 1:3268812‑M1/1‑64 (MQ=255) tgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTAAACAGCGCCTAACTATGTCGatat > 2:2293270‑M2/60‑90 (MQ=255) cGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgatatg < 1:2921762‑M1/90‑28 (MQ=255) aatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGc > 1:197146‑M2/54‑90 (MQ=255) aatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGc > 1:20575‑M2/54‑90 (MQ=255) aatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGc > 1:3241416‑M2/54‑90 (MQ=255) aatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGc > 2:1618461‑M2/54‑90 (MQ=255) aatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGc < 2:1993100‑M2/37‑1 (MQ=255) ttttCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgatatgagatcat > 1:1674094‑M1/1‑56 (MQ=255) ttttCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgatatgagatcat < 2:1877629‑M1/90‑35 (MQ=255) ttttCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgatatgagatcat > 1:157127‑M1/1‑56 (MQ=255) tgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCtt < 1:2007236‑M2/39‑1 (MQ=255) atgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTc > 2:500363‑M2/48‑90 (MQ=255) ccAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtca > 1:947073‑M1/1‑48 (MQ=255) tgactcagccgagaagaattgccccgcttattcgcaccttccTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCCTTTTCGGAAt < 2:270496‑M2/48‑1 (MQ=255) gtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAg > 2:946717‑M2/40‑90 (MQ=255) gtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAg > 2:673899‑M2/40‑90 (MQ=255) gtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAg > 2:3236081‑M2/40‑90 (MQ=255) tcCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga < 2:3096064‑M1/90‑49 (MQ=255) tcCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga < 2:2640912‑M1/90‑49 (MQ=255) cGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagc < 2:2767843‑M1/90‑51 (MQ=255) ttCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat < 1:1324101‑M1/90‑54 (MQ=255) ttCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgatatgagatcatgttagtcatctggagccat < 2:2165902‑M1/90‑54 (MQ=255) aagaatttccccgcttattcgcaccttccTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCgcttgctt < 1:2120085‑M2/61‑1 (MQ=255) ctacctTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaac < 1:2705229‑M1/90‑59 (MQ=255) agaatttccccgcttattcgcaccttccTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCTTGCTTc < 1:2196965‑M2/62‑1 (MQ=255) agaatttccccgcttattcgcaccttccTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCTTGCTTc < 2:1188153‑M2/62‑1 (MQ=255) tacctTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaaca > 1:513342‑M1/1‑31 (MQ=255) gaatttccccgcttattcgcaccttccTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCTTGCTTCa < 2:2716965‑M2/63‑1 (MQ=255) acctTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacag < 1:2609475‑M1/90‑61 (MQ=255) acctTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacag < 2:2082261‑M1/90‑61 (MQ=255) cctTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagg < 1:3013011‑M1/90‑62 (MQ=255) atttccccgcttattcgcaccttccTTAGTTAAACAgcgc < 1:400896‑M2/15‑1 (MQ=255) atttccccgcttattcgcaccttccTTAGTTAAACAgcgc > 2:400896‑M2/26‑40 (MQ=255) atttccccgcttattcgcaccttccTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCTTGCTTCAgc > 2:3146578‑M2/26‑90 (MQ=255) tttccccgcttattcgcaccttccTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCTTGCTTCAgcg < 2:3198536‑M2/66‑1 (MQ=255) ttATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgatatgagatcatgcttgtcatctggagccatagaacagggt < 1:2264060‑M1/90‑64 (MQ=255) tATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggtt > 1:2938261‑M1/1‑26 (MQ=255) ccccgcttattcgcaccttccTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCTTGCTTCAGCGCat < 1:3146578‑M2/69‑1 (MQ=255) aTGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgata > 1:606208‑M1/1‑25 (MQ=255) aTGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgata < 2:606208‑M1/50‑26 (MQ=255) gTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg < 2:1082892‑M1/85‑63 (MQ=255) ccgcttattcgcaccttccTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCTTGCTTCAGCGCatat > 2:1008370‑M2/20‑90 (MQ=255) gcttattcgcaccttccTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCTTGCTTCAGCGCATATTg < 1:173307‑M2/73‑1 (MQ=255) aTTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcat > 1:3338972‑M1/1‑20 (MQ=255) aTTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcat > 1:1804517‑M1/1‑20 (MQ=255) aTTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcat > 2:3318407‑M1/1‑20 (MQ=255) aTTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcat > 1:95308‑M1/1‑20 (MQ=255) aTTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat < 1:1200546‑M1/73‑54 (MQ=255) aTTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatct > 1:1759841‑M1/1‑20 (MQ=255) aTTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatct < 2:1759841‑M1/65‑46 (MQ=255) aTTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccc > 1:1562722‑M1/1‑20 (MQ=255) aTTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccc < 1:3035322‑M1/40‑21 (MQ=255) aTTAAACTAGCATGCGTTAGggaaggggcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcat > 2:3057549‑M1/1‑20 (MQ=255) ttcgcaccttccTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCTTGCTTCAGCGCATATTg > 2:1540149‑M2/13‑85 (MQ=255) aGCATGCGTTAGggaaggtgcgaacaagtccctgatatgaaatcatgtttgtcatctggagccatagaacagggttaatcatgagtcatc < 2:2869547‑M1/90‑79 (MQ=255) gCATGCGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatca > 1:1933819‑M1/1‑11 (MQ=255) gCATGCGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatca > 1:2653904‑M1/1‑11 (MQ=255) ccttccTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGt < 1:2775350‑M2/52‑1 (MQ=255) ttccTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCTTGCTTCAGCGCATATTGCCGCTACGAtt < 1:809673‑M2/84‑1 (MQ=255) ttccTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCTTGCTTCAGCGCATATTGCCGCTACGATTaa > 2:756813‑M2/5‑90 (MQ=255) gCGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaactt > 2:1493693‑M1/1‑7 (MQ=255) gCGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaactt > 1:840544‑M1/1‑7 (MQ=255) ccTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCgctt < 1:672855‑M2/57‑1 (MQ=255) ttagttaAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCTTGCTTCAGCGCATATTGCCGCTACGATTAAGCGa < 2:2960942/90‑1 (MQ=255) ttagttaAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCTTGCTTCAGCGCATATTGCCGCTACGATTAAGCGa < 2:1721057/90‑1 (MQ=255) agttaAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCTTGCTTCAGCGCATATTGCCGCTACGATTAAGCGAAc < 1:1861115/90‑1 (MQ=255) | AACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCTTGCTTCAGCGCATATTGCCGCTACGATTAAGCGAAC > NZ_CP009273/1902983‑1903160 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |