| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3512449 | 31 (0.260) | 160 (1.360) | 51/170 | 0.3 | 83.8% | intergenic (‑26/+375) | aroK/hofQ | shikimate kinase AroK/DNA uptake porin HofQ |
| ? | NZ_CP009273 | 3576788 = | NA (NA) | coding (391/417 nt) | BW25113_RS17825 | YrhA family protein | |||||
Only 100 of 344 total aligned reads displayed.
GCCCAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGACTGAAAATTATC > NZ_CP009273/3512360‑3512538 | aaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGACTATTCGtt < 2:3044603‑M2/11‑1 (MQ=255) cAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggt > 2:3009766‑M1/1‑87 (MQ=255) cAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggt < 2:2027872‑M1/90‑4 (MQ=255) aaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGACTATTCGTTa < 1:1209269‑M2/12‑1 (MQ=255) aaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGACTATTCGTTa < 1:3190080‑M2/12‑1 (MQ=255) aaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagatggagtcattaccGACTATTCGTTa > 2:49472‑M2/79‑90 (MQ=255) aatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGACTATTCGTTaa < 2:2772351‑M2/13‑1 (MQ=255) aatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGACTATTCGTTaa < 2:1964810‑M2/13‑1 (MQ=255) aTAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtga < 1:627804‑M1/90‑6 (MQ=255) gtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGACTATTCGTTAATGATa > 2:3297794‑M2/73‑90 (MQ=255) gCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctg > 1:2460782‑M1/1‑80 (MQ=255) ggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGACTATTCGTTAATGATaaa > 2:934201‑M2/71‑90 (MQ=255) ttttCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgcca < 2:353020‑M1/90‑14 (MQ=255) ttCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaac > 1:3020542‑M1/1‑75 (MQ=255) ttCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaac < 2:2243347‑M1/90‑16 (MQ=255) ttCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaac < 2:552345‑M1/90‑16 (MQ=255) ccGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaactt < 1:2056426‑M1/90‑18 (MQ=255) ggCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttac < 2:2154628‑M1/90‑20 (MQ=255) ggCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttac < 1:445955‑M1/90‑20 (MQ=255) atgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTc < 1:3335028‑M2/28‑1 (MQ=255) cccATAGGCCCAACCAGAAAGATATTGCGTTTCTCTTCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgat < 1:3104926‑M1/90‑24 (MQ=255) caaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTc < 1:93257‑M2/32‑1 (MQ=255) ccATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgatt < 1:2776062‑M1/90‑25 (MQ=255) cATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAATACTATTCGggtgatgctgccaacttactgattt < 2:396645‑M1/90‑26 (MQ=255) cATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgattt < 1:2987035‑M1/90‑26 (MQ=255) cATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgattc < 1:76490‑M1/90‑26 (MQ=255) gtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCagag < 2:2602232‑M2/36‑1 (MQ=255) ggCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgatttagtg < 1:1768523‑M1/90‑30 (MQ=255) atctggcattatctgaacataaaacactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAgc < 2:2396868‑M2/39‑1 (MQ=255) atcgggcattatctgaacataaaacactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAgc < 1:54346‑M2/39‑1 (MQ=255) tcgggcattatctgaacataaaacactatcattaagttgaagtcattaccGACTATTCGTTAATGATAAACCCACTTCGCTCAGAGAgcg > 2:249487‑M2/51‑90 (MQ=255) cAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgatttagtgtatg > 2:870868‑M1/1‑57 (MQ=255) cAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgcca > 2:2961205‑M1/1‑57 (MQ=255) cattatctgaacataaaacactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCa < 1:252366‑M2/45‑1 (MQ=255) attatctgaacataaaacactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAg > 2:1284483‑M2/45‑90 (MQ=255) aGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgatttagtgtatgatggt < 2:2307604‑M1/90‑39 (MQ=255) tgaacataaaacactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATg > 1:3140566‑M2/39‑90 (MQ=255) gaacataaaacactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGa > 1:1021637‑M2/38‑90 (MQ=255) gaacataaaacactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGa > 1:2678548‑M2/38‑90 (MQ=255) tatTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgatttagtgtatgat > 1:558120‑M1/1‑45 (MQ=255) atTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttga > 2:2594936‑M1/1‑44 (MQ=255) acataaaacactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAAc > 1:1085051‑M2/36‑90 (MQ=255) tGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgc < 1:7074‑M1/53‑12 (MQ=255) taaaacactatcaataagttggagtcattaccGACTATTCGTTa > 2:746723‑M2/33‑44 (MQ=255) taaaacactatcaataagttggagtcattaccGACTATTCGTTa < 1:746723‑M2/12‑1 (MQ=255) aaaacactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGaa < 2:133043‑M2/59‑1 (MQ=255) aaaacactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGaa < 1:1859972‑M2/59‑1 (MQ=255) gTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgcca > 1:1962511‑M1/1‑39 (MQ=255) aacactatcaataagttggagtcattaccGACTATTCGTTAATGATAACCCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAAc < 1:2864093‑M2/61‑1 (MQ=255) aacactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAAc < 1:3308240‑M2/61‑1 (MQ=255) ttCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctc > 2:587258‑M1/1‑37 (MQ=255) ttCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctc > 2:2456888‑M1/1‑37 (MQ=255) ttCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctc > 1:683409‑M1/1‑37 (MQ=255) tctcTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctcc > 1:838205‑M1/1‑36 (MQ=255) cactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCt > 1:1054679‑M2/28‑90 (MQ=255) ctatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAAc < 2:673479‑M2/61‑1 (MQ=255) ctatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCa > 2:796687‑M2/26‑90 (MQ=255) ctatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCa > 1:2801446‑M2/26‑90 (MQ=255) ctatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCa > 2:2070586‑M2/26‑90 (MQ=255) tatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCAt > 1:1685512‑M2/25‑90 (MQ=255) atcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATa < 2:1685512‑M2/67‑1 (MQ=255) ttttttCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttc < 2:3113797‑M1/90‑64 (MQ=255) tttttCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttct > 1:401949‑M1/1‑26 (MQ=255) tttCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgt < 1:2351394‑M1/90‑67 (MQ=255) gttggagtcattaccGACTATTCGTTAATGATAAACCCGCt > 2:691096‑M2/16‑41 (MQ=255) gttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTg > 2:2914728‑M2/16‑90 (MQ=255) tggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGcgcc < 2:2173556‑M2/42‑1 (MQ=255) tggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCg > 1:127472‑M2/14‑90 (MQ=255) tggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCg > 1:1526643‑M2/14‑90 (MQ=255) gagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCgag < 2:1225711‑M2/79‑1 (MQ=255) gagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCgag > 1:952418‑M2/12‑90 (MQ=255) cattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTc < 2:1929875‑M2/83‑1 (MQ=255) cattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTc < 1:2602722‑M2/83‑1 (MQ=255) tactaAGCCTATTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcag < 2:323099‑M1/90‑76 (MQ=255) attaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCa < 2:145326‑M2/84‑1 (MQ=255) ttaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAg > 1:345402‑M2/6‑90 (MQ=255) cGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGACTg > 2:2631793‑M2/2‑90 (MQ=255) gACTATTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtcc > 1:2130238‑M1/1‑9 (MQ=255) gACTATTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttc > 1:848461‑M1/1‑9 (MQ=255) gACTATTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggt > 1:3129555‑M1/1‑9 (MQ=255) gACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACAt < 2:3136535/51‑1 (MQ=255) aCTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAAc > 1:1730841/1‑60 (MQ=255) tATTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctc > 1:2095342‑M1/1‑6 (MQ=255) tATTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctc > 2:1078110‑M1/1‑6 (MQ=255) tATTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctc > 1:2312551‑M1/1‑6 (MQ=255) tATTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctc > 2:1768792‑M1/1‑6 (MQ=255) tATTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtc > 1:2709877‑M1/1‑6 (MQ=255) tATTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtc < 2:2709877‑M1/86‑81 (MQ=255) tATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGACTGaaaa > 1:1485951/1‑90 (MQ=255) tATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGACTGaaaa > 1:985384/1‑90 (MQ=255) aTTCGggtgatgctgccaacttgctgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcc > 2:1825394‑M1/1‑5 (MQ=255) aTTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcc > 2:2826151‑M1/1‑5 (MQ=255) aTTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcc > 1:1425074‑M1/1‑5 (MQ=255) aTTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcc < 2:2534599‑M1/90‑86 (MQ=255) aTTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcc > 2:1612261‑M1/1‑5 (MQ=255) aTTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcc > 1:2225131‑M1/1‑5 (MQ=255) aTTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcc < 1:2957811‑M1/90‑86 (MQ=255) ttCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGACTGAAAAtt < 1:3389997/90‑1 (MQ=255) ttCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGACTGAAAAtt < 1:3249339/90‑1 (MQ=255) gTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGACTGAAAATTAtc < 2:2096622/90‑1 (MQ=255) | GCCCAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGACTGAAAATTATC > NZ_CP009273/3512360‑3512538 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |