New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 = 299793278 (2.350)9 (0.080) 8/156 4.1 3.3% coding (101/330 nt) ykgJ YkgJ family cysteine cluster protein
?NZ_CP009273 = 299801 274 (2.530)coding (93/330 nt) ykgJ YkgJ family cysteine cluster protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 289 total aligned reads displayed.

AGGGCAATACATCGGGGGTTTTTCTGATTGGTACCGCTCATGCATCGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGCACCACACGTCATGCATGGATTCAGATTGCT  >  NZ_CP009273/299712‑299890
                                                                                         |                                                                                         
    cAATACATCGGGGGTTTTTCTGATTGGTACCGCTCATGCATCGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGTACTATTCCCGc                                                                                       >  1:2064183/1‑90 (MQ=255)
      aTACATCGGGGGTTTTTCTGATTGGTACCGCTCATGCATCGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCa                                                                                     >  1:3130567/1‑90 (MQ=255)
       tACATCGGGGTTTTTTCTGATTGGTCCCCCTCATGCACCGGTGAAAAGGGGATTTTTGTTCAGGGAGCTTGGGGGGAATAGTACCGCCAg                                                                                    <  2:2981964/90‑1 (MQ=255)
       tACATCGGGGGTTTTTCTGATTGGTCCCGCTCATGCATCGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAg                                                                                    <  2:1625616/90‑1 (MQ=255)
       tACATCGGGGGTTTTTCTGATTGGTACCGCTCATGCATCGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAg                                                                                    >  2:2380136/1‑90 (MQ=255)
         cATCGGGGGTTTTTCTGATTGGTACCGCTCATGCATCGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCa                                                                                  <  1:1052550/90‑1 (MQ=255)
           tCGGGGGTTTTTCTGATTGGTACCGCTCATGCATCGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCAtc                                                                                >  2:3067719/1‑90 (MQ=255)
           tCGGGGGTTTTTCTGATTGGTACCGCTCATGCATCGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCAtc                                                                                >  2:3319720/1‑90 (MQ=255)
           tCGGGGGTTTTTCTGATTGGTACCGCTCATGCATCGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCAtc                                                                                >  1:2769322/1‑90 (MQ=255)
           tCGGGGGTTTTTCTGATTGGTACCGCTCATGCATCGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAATACCGCCAGCAtc                                                                                >  2:1956698/1‑90 (MQ=255)
            cGGGGGTTTTTCTGATTGGTACCGCTCATGCATCGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCAtcg                                                                               >  1:3152153/1‑90 (MQ=255)
            cGGGGGTTTTTCTGATTGGTACCGCTCATGCATCGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCAtcg                                                                               >  1:2931530/1‑90 (MQ=255)
            cGGGGGTTTTTCTGATTGGTACCGCTCATGCATCGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCAtcg                                                                               >  1:1392428/1‑90 (MQ=255)
             ggggtTTTTTCTGATTGGTACCGCTCATGCATCGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCAtcgt                                                                              <  2:1091558/90‑1 (MQ=255)
              ggggTTTTTCTGATTGGTACCGCTCATGCATCGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCAtcgtc                                                                             <  1:366683/90‑1 (MQ=255)
              ggggTTTTTCTGATTGGTACCGCTCATGCATCGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAA‑AGTACCGCCAGCAtcgtcg                                                                            <  2:1493589/90‑1 (MQ=255)
                   ttttCTGATTGGTACCGCTCATGCATCGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCtt                                                                        >  1:317689/1‑90 (MQ=255)
                   ttttCTGATTGGTACCGCTCATGCATCGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCtt                                                                        >  2:2218982/1‑90 (MQ=255)
                        tGATTGGTACCGCTCATGCATCGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGAAATAGTACCGCCAGCATCGTCGGCTTCGGcc                                                                   <  2:874889/90‑1 (MQ=255)
                        tGATTGGTACCGCTCATGCATCGGTGAAAAGGGGATATTTGTTCAGTGAGCCGGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGcc                                                                   <  1:1678545/90‑1 (MQ=255)
                        tGATTGCTACCGCTCAACCGCCGGGGAAAGGGGGATATTTTTTAAGTGAGCCTGGCGGGAATGGTACCGCCAGCATCGTCGGCTTCGGcc                                                                   <  2:214473/90‑1 (MQ=255)
                         gATTGGTCCCGCTCATGCATCGGTAAAAAGGGGATATTTGTTCAGTGAGCCTGGGGGGAATAGTACCGCCAGCATCGTCGGCTTCGGccc                                                                  <  1:854333/90‑1 (MQ=255)
                         gATTGGTACCGCTCATGCATCGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGGATAGTACCGCCAGCATCGTCGGCTTCGGccc                                                                  >  1:3347546/1‑90 (MQ=255)
                          aTTGGTCCCGCTCATGCATCGGTGAAAGGGGGATATTTTTTCAGTGAGCCTGGGGGGAATGGTACCGCCAGCATCGTCGGCTTCGGCCCa                                                                 <  1:3009100/90‑1 (MQ=255)
                          aTTGGTCCCGCTCATGCATCGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCa                                                                 <  1:264503/90‑1 (MQ=255)
                          aTTGGTACCGCTCATGCATCGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCa                                                                 >  1:1000757/1‑90 (MQ=255)
                          aTTGGTACCGCTCATGCATCGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCa                                                                 <  2:1378378/90‑1 (MQ=255)
                          aTTGGTACCGCTCATGCATCGGTAAAAAGGGGATTTTTGTTCAGTGAGCCGGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCa                                                                 <  2:795413/90‑1 (MQ=255)
                                   gCTCATGCATCGGTGAAAAGGGGATATTTGTTCAGTGAGGCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAaga                                                        >  1:1951056/1‑90 (MQ=255)
                                   gCTCATGCATCGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCAtcgt                                                                              <  1:1692472/68‑1 (MQ=255)
                                   gCTCATGCATCGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCAtcgt                                                                              >  2:1692472/1‑68 (MQ=255)
                                   gCTCATGCATCGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAaga                                                        >  2:1233143/1‑90 (MQ=255)
                                   gCTCATGCATCGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAaga                                                        >  1:2320524/1‑90 (MQ=255)
                                   gCTCATGCATCGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGGCGGCTTCGGCCCAGTAAAAaga                                                        >  2:374227/1‑90 (MQ=255)
                                   gCTCATGCATCGGGGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAAAAAGACGGCCACCCGCGTGGGCGTCGGCCCGGGGAAAaga                                                        >  2:2119711/1‑90 (MQ=255)
                                       aTGCATCGGTGAAAAGGGGATTTTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGccc                                                                  <  2:1720462/76‑1 (MQ=255)
                                       aTGCATCGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGAcg                                                    >  1:715093/1‑90 (MQ=255)
                                        tGCATCGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGAcgc                                                   >  1:2221196/1‑90 (MQ=255)
                                             cGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGaaa                                              >  1:2381132/1‑90 (MQ=255)
                                             cGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGaaa                                              >  1:1482141/1‑90 (MQ=255)
                                             cGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGaaa                                              >  2:2530650/1‑90 (MQ=255)
                                             cGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGaaa                                              >  1:2188149/1‑90 (MQ=255)
                                             cGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGaaa                                              <  1:518694/90‑1 (MQ=255)
                                              ggTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGaaaa                                             >  2:560769/1‑90 (MQ=255)
                                              ggTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGaaaa                                             >  2:3200332/1‑90 (MQ=255)
                                              ggTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGaaaa                                             >  2:1803605/1‑90 (MQ=255)
                                                   aaaGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGca                                        <  2:2578263/90‑1 (MQ=255)
                                                      ggggATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCAGCGGCGGCTTTGGCCCAGGAAAAAGAGACGCGGGAAAATGCacaa                                     >  2:2274312/1‑90 (MQ=255)
                                                        ggATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCacaaca                                   >  1:2459047/1‑90 (MQ=255)
                                                        ggATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCacaaca                                   >  1:1228029/1‑90 (MQ=255)
                                                         gATATTTGTTCAGTGAGCCTGGGGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAg                                  <  2:342573/90‑1 (MQ=255)
                                                         gATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAg                                  >  1:2298015/1‑90 (MQ=255)
                                                         gATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAg                                  >  2:2880506/1‑90 (MQ=255)
                                                         gATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAg                                  <  2:1535228/90‑1 (MQ=255)
                                                          atatTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAgg                                 <  1:2530650/90‑1 (MQ=255)
                                                           tatTTTTTCAGTGAGCCTGGCGGAAATAGTCCCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGc                                <  2:2489509/90‑1 (MQ=255)
                                                           tatTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGc                                <  2:1516411/90‑1 (MQ=255)
                                                           tatTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGc                                <  1:2694771/90‑1 (MQ=255)
                                                           tatTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGc                                <  1:2017043/90‑1 (MQ=255)
                                                           tatTTGTTCAGTGAGCCTGGCGGGAATAGGACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGc                                >  2:3002887/1‑90 (MQ=255)
                                                            atTTGTTCAGTGAGCCTGGGGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGca                               <  2:2197566/90‑1 (MQ=255)
                                                            atTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGca                               <  1:1748078/90‑1 (MQ=255)
                                                            atTTGTTCAGGAAGCCGGGGGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGca                               <  1:415444/90‑1 (MQ=255)
                                                              ttGTTCGGGGCGCCTGGCGGAAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGcacc                             <  2:2712693/90‑1 (MQ=255)
                                                              ttGTTCAGTGAGCCGGGGGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGcacc                             <  2:1912982/90‑1 (MQ=255)
                                                               tGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGcacca                            <  2:2559169/90‑1 (MQ=255)
                                                                gTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGcaccac                           >  2:2583182/1‑90 (MQ=255)
                                                                gTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGcaccac                           <  2:3165518/90‑1 (MQ=255)
                                                                gTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGcaccac                           >  1:2987737/1‑90 (MQ=255)
                                                                 ttCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGCACcaca                          <  1:1271732/90‑1 (MQ=255)
                                                                  tCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGGACAATAGGCACCacac                         >  2:1419676/1‑90 (MQ=255)
                                                                  tCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGCACCacac                         >  2:2742151/1‑90 (MQ=255)
                                                                  tCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGCACCacac                         >  1:1859968/1‑90 (MQ=255)
                                                                     gTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGCACCACACGTc                      >  2:1273225/1‑90 (MQ=255)
                                                                     gTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGCACCACACGTc                      >  2:2165501/1‑90 (MQ=255)
                                                                     gTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGCACCACACGTc                      >  2:1017793/1‑90 (MQ=255)
                                                                       gAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGCACCACACGTcat                    <  2:2811139/90‑1 (MQ=255)
                                                                       gAGCCTGGCGGGAACAGGAACGCCAGCCTCGTCGGGTTTCGCCCAGGAAAAAGAGACGCGGAAAAACGCGCAACACGGACCACACGTcat                    >  2:743337/1‑90 (MQ=255)
                                                                       gAGCCGGGCGGAAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGCACCACACGTcat                    <  2:9490/90‑1 (MQ=255)
                                                                          ccTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGcaccac                           <  1:3358022/80‑1 (MQ=255)
                                                                          ccTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGCACCACACGTcatgca                 >  1:894021/1‑90 (MQ=255)
                                                                          ccTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGCACCACACGTcatgca                 >  1:3373807/1‑90 (MQ=255)
                                                                          ccTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGCACCACACGTcatgca                 >  1:3244726/1‑90 (MQ=255)
                                                                           cgggCGGAAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGCACCACACGTcatgcat                <  2:902376/88‑1 (MQ=255)
                                                                           cTGGGGGGAATAGTACCGCATGCATCGTTGTCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACACCAGCCCCCTCACGTcaagcat                <  2:613408/90‑1 (MQ=255)
                                                                           cTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGCACCACACGTcatgcat                <  2:2445506/90‑1 (MQ=255)
                                                                           cTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGCACCACACGTcatgcat                <  2:715093/90‑1 (MQ=255)
                                                                           cTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGCACCACACGTcatgcat                <  1:2742151/90‑1 (MQ=255)
                                                                           cTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGCACCACACGTcatgcat                <  1:2847082/90‑1 (MQ=255)
                                                                           cTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGCACCACACGTcatgcat                <  1:636591/90‑1 (MQ=255)
                                                                             ggCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGCACCACACGTCATGCATgg              >  1:1631272/1‑90 (MQ=255)
                                                                               cGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGCACCACACGTCATGCATGGAt            >  1:1107986/1‑90 (MQ=255)
                                                                                 ggAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGCACCACACGTCATGCATGGATTc          >  2:3380786/1‑90 (MQ=255)
                                                                                   aaTAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGCACCACACGTCATGCATGGATTCAg        <  2:1668634/90‑1 (MQ=255)
                                                                                     tAGTCCCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGCACCACACGTCATGCATGGATTCAGAt      <  1:2853900/90‑1 (MQ=255)
                                                                                     tAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGCACCACACGTCATGCATGGATTCAGAt      <  2:2681448/90‑1 (MQ=255)
                                                                                     tAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGCACCACACGTCATGCATGGATTCAGAt      <  1:804852/90‑1 (MQ=255)
                                                                                     aaGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGCACCACACGTCATGCATGGATTCAGAt      <  2:385162/89‑1 (MQ=255)
                                                                                       gTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGCACCACACGTCATGCATGGATTCAGATTg    >  2:3237459/1‑90 (MQ=255)
                                                                                         aCCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGCACCACACGTCATGCATGGATTCAGATTGCt  <  1:1079563/90‑1 (MQ=255)
                                                                                         |                                                                                         
AGGGCAATACATCGGGGGTTTTTCTGATTGGTACCGCTCATGCATCGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAACAGGCACCACACGTCATGCATGGATTCAGATTGCT  >  NZ_CP009273/299712‑299890

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.