BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NZ_CP009273	2,399,465	Δ7 bp	coding (650‑656/939 nt)	lrhA ←	transcriptional regulator LrhA

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2399465	2399471	7	150 [0]	[0] 151	lrhA	transcriptional regulator LrhA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 2399464	0 (0.000)	150 (1.270)	59/170	0.2	100%	coding (657/939 nt)	lrhA	transcriptional regulator LrhA
*	?	NZ_CP009273	2399472 =	0 (0.000)	150 (1.270)	59/170	0.2	100%	coding (649/939 nt)	lrhA	transcriptional regulator LrhA

Only 100 of 150 total aligned reads displayed.

CACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGAAACGGGCTAGGATCATCCAGCA  >  NZ_CP009273/2399376‑2399549

cacGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGGCGAGa                                                                                      >  2:3048159‑M1/1‑89 (MQ=255)

  cGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaag                                                                                    >  2:651771‑M1/1‑87 (MQ=255)

  cGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaag                                                                                    >  1:395228‑M1/1‑87 (MQ=255)

  cGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaag                                                                                    >  2:2992259‑M1/1‑87 (MQ=255)

   gCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagc                                                                                   >  1:2955307‑M1/1‑86 (MQ=255)

     aGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagcca                                                                                 >  1:51234‑M1/1‑84 (MQ=255)

     aGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagcca                                                                                 >  2:3258850‑M1/1‑84 (MQ=255)

       gTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagt                                                                               >  1:831758‑M1/1‑82 (MQ=255)

       gTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagt                                                                               >  1:2467123‑M1/1‑82 (MQ=255)

       gTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagt                                                                               <  2:2360027‑M1/90‑9 (MQ=255)

       gTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagt                                                                               <  2:2678736‑M1/90‑9 (MQ=255)

       gTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagt                                                                               >  2:436874‑M1/1‑82 (MQ=255)

       gTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagt                                                                               >  1:1234505‑M1/1‑82 (MQ=255)

        tCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtc                                                                              <  2:3099544‑M1/90‑10 (MQ=255)

        tCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtc                                                                              >  2:341239‑M1/1‑81 (MQ=255)

        cccgGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGCCCGGCTTTCCCTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtc                                                                              <  2:1651724‑M1/89‑10 (MQ=255)

          cGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgc                                                                            <  2:2163684‑M1/90‑12 (MQ=255)

            ggCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgcca                                                                          <  1:651771‑M1/90‑14 (MQ=255)

             gCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccat                                                                         <  1:1270412‑M1/90‑15 (MQ=255)

              cTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatg                                                                        <  1:1818566‑M1/90‑16 (MQ=255)

               tcatcaTCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatgg                                                                       <  2:132952‑M1/90‑17 (MQ=255)

                catcatCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatgga                                                                      >  2:838670‑M1/1‑73 (MQ=255)

                catcatCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatgga                                                                      >  1:2533911‑M1/1‑73 (MQ=255)

                catcatCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatgga                                                                      >  2:1460086‑M1/1‑73 (MQ=255)

                catcatCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgcc                                                                           >  2:3135257‑M1/1‑73 (MQ=255)

                catcatCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgcc                                                                           <  1:3135257‑M1/85‑13 (MQ=255)

                  tcatcTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaat                                                                    >  1:552613‑M1/1‑71 (MQ=255)

                  tcatcTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaat                                                                    >  2:91661‑M1/1‑71 (MQ=255)

                     tctcAACCGGCCTTGCCGTCCCGCCAAGACCGGCTTTCCCTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatc                                                                 <  2:1953146‑M1/90‑23 (MQ=255)

                     tctcAACCGGCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatc                                                                 <  1:2014016‑M1/90‑23 (MQ=255)

                     tctcAACCGGCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatc                                                                 <  2:887463‑M1/90‑23 (MQ=255)

                     tctcAACCGGCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatc                                                                 <  2:1596673‑M1/90‑23 (MQ=255)

                     tctcAACCGGCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatc                                                                 <  2:1045832‑M1/90‑23 (MQ=255)

                     tccaaaccggCGTTGCTGTCACGCCCAGACCGGCTTTGACTTCCGCCCGATCGGCCGGAAGCGTCGAGaagccagtcgccatggaatatc                                                                 <  2:2703733‑M1/86‑23 (MQ=255)

                       tcAACCGGCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctg                                                               <  1:1239858‑M1/90‑25 (MQ=255)

                          aCCGGCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctt                                                            <  2:776392‑M1/90‑28 (MQ=255)

                            cGGCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgcttta                                                          >  2:2758648‑M1/1‑61 (MQ=255)

                             ggCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttat                                                         >  2:1821487‑M1/1‑60 (MQ=255)

                             ggCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgcc                                                                           >  1:2481432‑M1/1‑60 (MQ=255)

                             ggCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgcc                                                                           >  1:1392491‑M1/1‑60 (MQ=255)

                             ggCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgcc                                                                           <  2:1392491‑M1/72‑13 (MQ=255)

                             ggCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgcc                                                                           <  2:2481432‑M1/72‑13 (MQ=255)

                               ccTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttatta                                                       >  2:705471‑M1/1‑58 (MQ=255)

                                   gCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcg                                                   <  1:2170392‑M1/90‑37 (MQ=255)

                                   gCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcg                                                   <  1:2349854‑M1/90‑37 (MQ=255)

                                      gTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcg                                                <  1:448961‑M1/90‑40 (MQ=255)

                                      gTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcg                                                <  2:551005‑M1/90‑40 (MQ=255)

                                      gTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcg                                                <  2:2101341‑M1/90‑40 (MQ=255)

                                        cACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgcc                                              <  1:617531‑M1/90‑42 (MQ=255)

                                        cACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgcc                                              <  2:112816‑M1/90‑42 (MQ=255)

                                        cACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgcc                                              <  2:2306607‑M1/90‑42 (MQ=255)

                                        cACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgcc                                              >  2:339163‑M1/1‑49 (MQ=255)

                                        cACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgac                                              <  1:100508‑M1/90‑42 (MQ=255)

                                             cAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgct                                                             <  1:2912272‑M1/70‑27 (MQ=255)

                                                gACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagcaccat                                      >  1:1301837‑M1/1‑41 (MQ=255)

                                                   cGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagcaccatatc                                   >  1:3156918‑M1/1‑38 (MQ=255)

                                                    ggCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagcaccatatcg                                  >  2:2847453‑M1/1‑37 (MQ=255)

                                                    ggCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagcaccatatcg                                  >  1:2688608‑M1/1‑37 (MQ=255)

                                                    ggCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagcaccatatcg                                  >  2:692887‑M1/1‑37 (MQ=255)

                                                     gCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagcaccatatcgc                                 <  2:835064‑M1/90‑55 (MQ=255)

                                                     gCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagcaccatatcgc                                 <  2:2500871‑M1/90‑55 (MQ=255)

                                                         tCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagcaccatatcgcgaaa                             <  1:1463603‑M1/90‑59 (MQ=255)

                                                         tCACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagcaccatatcgcgaaa                             >  2:2303345‑M1/1‑32 (MQ=255)

                                                          cACTGCTGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagcaccatatcgcgaaac                            <  1:3371615‑M1/90‑60 (MQ=255)

                                                          cACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagccccatatcgcgaaac                            <  1:797650‑M1/90‑60 (MQ=255)

                                                          cACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagcaccatatcgcgaaac                            <  2:3175647‑M1/90‑60 (MQ=255)

                                                          cACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagcaccatatcgcgaaac                            <  1:536948‑M1/90‑60 (MQ=255)

                                                          cACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagcaccatatcgcgaaac                            <  2:1854036‑M1/90‑60 (MQ=255)

                                                          cACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagcaccatatcgcgaaac                            <  2:3095711‑M1/90‑60 (MQ=255)

                                                          cACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagcaccatatcgcgaaac                            <  1:15494‑M1/90‑60 (MQ=255)

                                                          cACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagcaccatatcgcgaaac                            <  1:341239‑M1/90‑60 (MQ=255)

                                                          cACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagcaccatatcgcgaaac                            <  1:1821487‑M1/90‑60 (MQ=255)

                                                          cACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagcaccatatcgcgaaac                            <  2:2970323‑M1/90‑60 (MQ=255)

                                                          cACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagcaccatatcgcgaaac                            <  2:2946668‑M1/90‑60 (MQ=255)

                                                          cACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagcaccatatcgcgaaac                            <  1:3326427‑M1/90‑60 (MQ=255)

                                                          cACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagcaccatatcgcgaaac                            <  2:2809108‑M1/90‑60 (MQ=255)

                                                          cACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagcaccatatcgcgaaac                            <  1:188117‑M1/90‑60 (MQ=255)

                                                          cACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagcaccatatcgcgaaac                            <  1:2280334‑M1/90‑60 (MQ=255)

                                                          cACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagcaccatatcgcgaaac                            <  1:2550989‑M1/90‑60 (MQ=255)

                                                          cACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagcaccatatcgcgaaac                            <  1:948890‑M1/90‑60 (MQ=255)

                                                          cACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagcaccatatcgcgaaac                            <  2:204309‑M1/90‑60 (MQ=255)

                                                          cACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagcaccatatcgcgaaac                            <  2:1179370‑M1/90‑60 (MQ=255)

                                                          cACTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccat                                                                         <  2:2249371‑M1/45‑15 (MQ=255)

                                                           aCTGCCGCACGAACGGCCGGAAGCGTCGAGaagccagtcgcccatggaatatctgctttattaagcgtcgccagcaccatatcgcgaaac                           <  2:2735246‑M1/90‑61 (MQ=255)

                                                               ccGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctt                                                            <  1:1492147‑M1/53‑28 (MQ=255)

                                                               ccGCACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctt                                                            >  2:1492147‑M1/1‑26 (MQ=255)

                                                                  cACGAACGGCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagcaccatatcgcgaaacgggctagg                    <  2:2955307‑M1/90‑68 (MQ=255)

                                                                       aCGGCCGGAAGCGCCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagcaccatatcgcgaaacgggctaggatcat               <  2:2052875‑M1/90‑73 (MQ=255)

                                                                         ggCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagcaccatatcgcgaaacgggctaggatcatcc             <  1:440296‑M1/90‑75 (MQ=255)

                                                                          gCCGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagcaccatatcgcgaaacgggctaggatcatcca            <  1:1103343‑M1/90‑76 (MQ=255)

                                                                          gCCGGAAGCGTCGAGaagccagtcgccatggaatatc                                                                 <  1:2961269‑M1/37‑23 (MQ=255)

                                                                            cGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagcaccatatcgcgaaacgggctaggatcatccagc          <  2:458673‑M1/90‑78 (MQ=255)

                                                                            cGGAAGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagcaccatatcgcgaaacgggctaggatcatccagc          <  1:1339606‑M1/90‑78 (MQ=255)

                                                                               aaGCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagcaccatatcgcgaaacgggctaggatcatccagcaat       <  1:453879‑M1/90‑81 (MQ=255)

                                                                                 gCGTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagcaccatatcgcgaaacgggctaggatcatccagcaatac     <  1:2847453‑M1/90‑83 (MQ=255)

                                                                                   gTCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagcaccatatcgcgaaacgggctaggatcatccagcaatacaa   <  1:2651526‑M1/90‑85 (MQ=255)

                                                                                    tCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagcaccatatcgcgaaacgggctaggatcatccagcaatacaag  <  1:355005‑M1/90‑86 (MQ=255)

                                                                                    tCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagcaccatatcgcgaaacgggctaggatcatccagcaatacaag  >  2:3404336‑M1/1‑5 (MQ=255)

                                                                                    tCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagcaccatatcgcgaaacgggctaggatcatccagcaatacaag  >  2:2408267‑M1/1‑5 (MQ=255)

                                                                                    tCGAGaagccagtcgccatggaatatctgctttattaagcgtcgccagcaccatatcgcgaaacgggctaggaccatccagcaatacaag  >  1:603915‑M1/1‑5 (MQ=255)

CACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGAAACGGGCTAGGATCATCCAGCA  >  NZ_CP009273/2399376‑2399549

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`