| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 2282398 = | NA (NA) | 39 (1.960) | 17/166 | 0.2 | 100% | pseudogene (3/2532 nt) | yejO | autotransporter YejO |
| ? | NZ_CP009273 | = 3629062 | 0 (0.000) | coding (862/1053 nt) | yhiM | DUF2776 domain‑containing protein | |||||
CATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/2282486‑2282398‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAACGAACAGGTACGTCTCCATACCAGTGCCAGTAGCCAGACTTTTGAGAATATGCTGTAACAGATCATTCCGAGGCAAATAAGA < NZ_CP009273/3629062‑3628977 CATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCC < 2:564304/90‑1 ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT > 2:80437/1‑90 ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT > 2:260484/1‑90 ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT > 2:562200/1‑90 ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT > 2:505447/1‑90 ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT > 1:447882/1‑90 GGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAAC > 2:402389/1‑90 GAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACA > 1:380249/1‑90 AAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTAC < 1:80437/90‑1 AAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTACG < 1:156985/90‑1 AAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTACG < 2:284530/90‑1 AAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTACG < 2:583241/90‑1 AAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTACG < 2:11532/90‑1 AAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTACG < 1:91846/90‑1 ATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTACGTC < 1:403695/90‑1 TCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTACGTCT < 1:176192/90‑1 GAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTACGTCTCCATACCAGTGCC > 1:11650/1‑90 AATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTACGTCTCCATACCAGTGCCAGTAG > 1:239638/1‑90 AATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTACGTCTCCATACCAGTGCCAGTAG > 1:142558/1‑90 AATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTACG > 2:132126/1‑69 AATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTACG < 1:132126/69‑1 CTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTACGTCTCCATACCAGTGCCAGTAGCCAGACTTTT < 1:184532/90‑1 CTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTACGTCTCCATACCAGTGCCAGTAGCCAGACTTTT < 2:519365/90‑1 CAGCCGAGAAGAATTTCCCCGCTTATTCGCCCCTTCCCTAACGAACAGGTACGTCTCCATACCAGTGCCAGTAGCCAGACTTTTGAGAAT < 2:262575/90‑1 CAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTACGTCTCCATACCAGTGCCAGTAGCCAGACTTTTGAGAAT < 2:229043/90‑1 CAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTACGTCTCCATACCAGTGCCAGTAGCCAGACTTTTGAGAAT < 2:3452/90‑1 CAGCCGAGAAGAATTTCCCAGCTTATTCGCACCTTCCCTAACGAACAGGTACGTCTCCATACCAGTGCCAGTAGCCAGACTTTTGAGAAT < 1:291648/90‑1 GCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTACGTCTCCATACCAGTGCCAGTAGCCAGACTTTTGAGAATAT < 2:133841/90‑1 GCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTACGTCTCCATACCAGTGCCAGTAGCCAGACTTTTGAGAATAT < 1:416073/90‑1 CGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTACGTCTCCATACCAGTGCCAGTAGCCAGACTTTTGAGAATATGC < 2:11650/90‑1 CGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTACGTCTCCATACCAGTGCCAGTAGCCAGACTTTTGAGAATATGC < 1:90316/90‑1 GAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTACGTCTCCATACCAGTGCCAGTAGCCAGACTTTTGAGAATATGCTGTAAC < 2:380249/90‑1 cCCCCGCTTATTCGCGCCTTCCCTAACGAACAGGTACGTCTCCATACCAGTGCCAGTAGCCAGACTTTTGAGAATATGCTGTAACAGATC < 2:272122/89‑1 TTCGCCCCTTCCCTAACGAACAGGTACGTCTCCATACCAGTGCCAGTAGCCAGACTTTTGAGAATATGCTGTAACAGATCATTCCGAGGC < 2:424796/90‑1 ACCTTCCCTAACGAACAGGTACGTCTCCATACCAGTGCCAGTAGCCAGACTTTTGAGAATATGCTGTAACAGATCATTCCGAGGCAAATA < 2:212633/90‑1 TTCCCTAACGAACAGGTACGTCTCCATACCAGTGCCAGTAGCCAGACTTTTGAGAATATGCTGTAACAGATCATTCCGAGGCAAATAAGA > 2:500718/1‑90 TTCCCTAACGAACAGGTACGTCTCCATACCAGTGCCAGTAGCCAGACTTTTGAGAATATGCTGTAACAGATCATTCCGAGGCAAATAAGA > 2:12502/1‑90 TTCCCTAACGAACAGGTACGTCTCCATACCAGTGCCAGTAGCCAGACTTTTGAGAAT > 1:256600/1‑57 TTCCCTAACGAACAGGTACGTCTCCATACCAGTGCCAGTAGCCAGACTTTTGAGAAT < 2:256600/57‑1 CATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/2282486‑2282398‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAACGAACAGGTACGTCTCCATACCAGTGCCAGTAGCCAGACTTTTGAGAATATGCTGTAACAGATCATTCCGAGGCAAATAAGA < NZ_CP009273/3629062‑3628977 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |