| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 2282398 = | NA (NA) | 39 (1.960) | 17/166 | 0.2 | 100% | pseudogene (3/2532 nt) | yejO | autotransporter YejO |
| ? | NZ_CP009273 | = 3629062 | 0 (0.000) | coding (862/1053 nt) | yhiM | DUF2776 domain‑containing protein | |||||
TCTTATTTGCCTCGGAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGCCTTTTCCTGGCATCGTTTCTTGCGGAAATGGCGCAGACCGACATG > NZ_CP009273/3628977‑3629151 | tCTTATTTGCCTCGGAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaa > 2:12502‑M2/1‑86 (MQ=255)tCTTATTTGCCTCGGAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaa > 2:500718‑M2/1‑86 (MQ=255) tATTTGCCTCGGAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggt < 2:212633‑M2/90‑8 (MQ=255) gCCTCGGAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggggcgaa < 2:424796‑M2/90‑13 (MQ=255) gATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggcgcgaataagcggggg < 2:272122‑M2/90‑23 (MQ=255) gTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattc < 2:380249‑M2/90‑28 (MQ=255) gCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcg < 2:11650‑M2/90‑34 (MQ=255) gCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcg < 1:90316‑M2/90‑34 (MQ=255) atatTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggc < 2:133841‑M2/90‑36 (MQ=255) atatTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggc < 1:416073‑M2/90‑36 (MQ=255) atTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagctgggaaattcttctcggctg < 1:291648‑M2/90‑38 (MQ=255) atTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctg < 2:3452‑M2/90‑38 (MQ=255) atTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctg < 2:229043‑M2/90‑38 (MQ=255) atTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggggcgaataagcggggaaattcttctcggctg < 2:262575‑M2/90‑38 (MQ=255) atTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaa > 1:256600‑M2/1‑53 (MQ=255) atTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaa < 2:256600‑M2/57‑5 (MQ=255) aaaaGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcag < 2:519365‑M2/90‑44 (MQ=255) aaaaGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcag < 1:184532‑M2/90‑44 (MQ=255) cTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatt > 1:239638‑M2/1‑37 (MQ=255) cTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatt > 1:142558‑M2/1‑37 (MQ=255) ggCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttc > 1:11650‑M2/1‑32 (MQ=255) agaCGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccga < 1:176192‑M2/90‑72 (MQ=255) gaCGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgat < 1:403695‑M2/90‑73 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattt < 1:91846‑M2/90‑75 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattt < 2:11532‑M2/90‑75 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattt < 2:583241‑M2/90‑75 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattt < 1:156985‑M2/90‑75 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattt < 2:284530‑M2/90‑75 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatt < 1:132126‑M2/69‑54 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatt > 2:132126‑M2/1‑16 (MQ=255) gTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttt < 1:80437‑M2/90‑76 (MQ=255) tGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctc > 1:380249‑M2/1‑10 (MQ=255) gTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcc > 2:402389‑M2/1‑9 (MQ=255) aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 2:260484‑M2/1‑2 (MQ=255) aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 2:505447‑M2/1‑2 (MQ=255) aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 1:447882‑M2/1‑2 (MQ=255) aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 2:562200‑M2/1‑2 (MQ=255) aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 2:80437‑M2/1‑2 (MQ=255) gggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatg < 2:564304‑M2/90‑90 (MQ=255) | TCTTATTTGCCTCGGAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGCCTTTTCCTGGCATCGTTTCTTGCGGAAATGGCGCAGACCGACATG > NZ_CP009273/3628977‑3629151 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |