Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3454158	3454168	11	2 [1]	[0] 3	gspF	type II secretion system inner membrane protein GspF

GCCAGCGTCTGGCAAATGCGGCAGAGAACGTTCGCCAGGGTAACAGCATTCATCTTTCGCTGGAACAAACCGCAATTTTCCCGCCGATGATG  >  NZ_CP009273/3454068‑3454159                                                                                          |   cccAGCGTCTGAAAAAGGCGGCAGAGAACGTTCGCCAGGGAAACAGCATTCATTTTTCGCGGAAAAAACCCGCATTTTCCCCGCCgatga    <  2:54012/89‑1 (MQ=255)   cggcgcCTGGCAAAGGCGGCAGAGAACTTCCGCCAGGGTAACAGCATTCTTTTTTCGCTGAAAAAAACCGCATTTTCCCCGCCGatgatg  <  2:264316/88‑1 (MQ=255)                                                                                          |   GCCAGCGTCTGGCAAATGCGGCAGAGAACGTTCGCCAGGGTAACAGCATTCATCTTTCGCTGGAACAAACCGCAATTTTCCCGCCGATGATG  >  NZ_CP009273/3454068‑3454159

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑