| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 2282398 = | NA (NA) | 32 (2.110) | 17/166 | 0.1 | 100% | pseudogene (3/2532 nt) | yejO | autotransporter YejO |
| ? | NZ_CP009273 | = 3629062 | 0 (0.000) | coding (862/1053 nt) | yhiM | DUF2776 domain‑containing protein | |||||
ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/2282485‑2282398‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAACGAACAGGTACGTCTCCATACCAGTGCCAGTAGCCAGACTTTTGAGAATATGCTGTAACAGATCATTCCGAGGCAAATA < NZ_CP009273/3629062‑3628980 ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT > 1:432195/1‑90ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT > 1:407474/1‑90ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT > 2:353595/1‑90ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT > 1:278691/1‑90 TTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGTTTATTCGCACCTTCCCTAA > 1:205581/1‑90 TTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAA > 2:149283/1‑90 TTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAA < 2:90174/90‑1 TTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAA < 1:130984/90‑1 AAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTACG < 2:96234/90‑1 AAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTACG < 1:98699/90‑1 AAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTACG < 1:380335/90‑1 ATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTACGTC < 2:72660/90‑1 ATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTACGTC < 1:154845/90‑1 CGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTACGTCTC < 2:425842/90‑1 AAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTACGTCTCCATACCAGTGCCA < 2:348491/90‑1 AATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTACGTCTCC > 1:167092/1‑74 AATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTACGTCTCC < 2:167092/74‑1 ATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTACGTCTCCACACCAGTGCCAGTAGCCAGAC < 2:98274/90‑1 TGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTACGTCTCCATACCAGTGCCAGTAGCCAGACTTTTG > 2:304574/1‑90 GAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTACGTCTCCATACCAGTGCCAGTAGCCAGACTTTTGA < 1:277296/90‑1 CAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTACGTCTCCATACCAGTGCCAGTAGCCAGACTTTTGAGAAT < 2:182485/90‑1 CAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTACGTCTCCATACCAGTGCCAGTAGCCAGACTTTTGAGAAT > 1:186669/1‑90 GCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTACGTCTCCATACCAGTGCCAGTAGCCAGACTTTTGAGAATAT < 2:360840/90‑1 GCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTACGTCTCCATACCAGTGCCAGTAGCCAGACTTTTGAGAATAT < 1:117732/90‑1 CGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTACGTCTCCATACCAGTGCCAGTAGCCAGACTTTTGAGAATATGC < 1:70354/90‑1 CGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTACGTCTCCATACCAGTGCCAGTAGCCAGACTTTTGAGAATATGC < 1:124345/90‑1 gTTTCCCCGCTTATTCGCACCTTCCCTAACGAACAGGTACGTCTCCATACCAGTGCCAGTAGCCAGACTTTTGAGAATATGCTGTAACAG > 2:187028/2‑90 CCCGCTTATTCGCACCTTCCCTAACGAACAGGTACGTCTCCATACCAGTGCCAGTAGCCAGACTTTTGAGAATATG < 2:233547/76‑1 CCCGCTTATTCGCACCTTCCCTAACGAACAGGTACGTCTCCATACCAGTGCCAGTAGCCAGACTTTTGAGAATATG > 1:233547/1‑76 TTCGCACCTTCCCTAACGAACAGGTACGTCTCCATACCAGTGCCAGTAGCCAGACTTTTGAGAATATGCTGTAACAGATCATTCCGAGGC < 2:235427/90‑1 ACCTTCCCTAACGAACAGGTACGTCTCCATACCAGTGCCAGTAGCCAGACTTTTGAGAATATGCTGTAACAGATCATTCCGAGGCAAATA < 2:382156/90‑1 ACCTTCCCTAACGAACAGGTACGTCTCCATACCAGTGCCAGTAGCCAGACTTTTGAGAATATGCTGTAACAGATCATTCCGAGGCAAATA < 1:101642/90‑1 ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/2282485‑2282398‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAACGAACAGGTACGTCTCCATACCAGTGCCAGTAGCCAGACTTTTGAGAATATGCTGTAACAGATCATTCCGAGGCAAATA < NZ_CP009273/3629062‑3628980 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |