| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 2282398 = | NA (NA) | 32 (2.110) | 17/166 | 0.1 | 100% | pseudogene (3/2532 nt) | yejO | autotransporter YejO |
| ? | NZ_CP009273 | = 3629062 | 0 (0.000) | coding (862/1053 nt) | yhiM | DUF2776 domain‑containing protein | |||||
TATTTGCCTCGGAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGCCTTTTCCTGGCATCGTTTCTTGCGGAAATGGCGCAGACCGACAT > NZ_CP009273/3628980‑3629150 | tATTTGCCTCGGAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggt < 1:101642‑M2/90‑8 (MQ=255)tATTTGCCTCGGAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggt < 2:382156‑M2/90‑8 (MQ=255) gCCTCGGAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaa < 2:235427‑M2/90‑13 (MQ=255) cTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaac > 2:187028‑M2/1‑65 (MQ=255) gCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcg < 1:124345‑M2/90‑34 (MQ=255) gCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcg < 1:70354‑M2/90‑34 (MQ=255) cATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggg > 1:233547‑M2/1‑56 (MQ=255) cATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggg < 2:233547‑M2/76‑21 (MQ=255) atatTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggc < 1:117732‑M2/90‑36 (MQ=255) atatTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggc < 2:360840‑M2/90‑36 (MQ=255) atTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctg > 1:186669‑M2/1‑53 (MQ=255) atTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctg < 2:182485‑M2/90‑38 (MQ=255) tcAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactc < 1:277296‑M2/90‑42 (MQ=255) cAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactca > 2:304574‑M2/1‑48 (MQ=255) gTCTGGCTACTGGCACTGGTGTGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcat < 2:98274‑M2/90‑48 (MQ=255) tGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttctt < 2:348491‑M2/90‑58 (MQ=255) ggAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatt < 2:167092‑M2/74‑54 (MQ=255) ggAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatt > 1:167092‑M2/1‑21 (MQ=255) gagaCGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccg < 2:425842‑M2/90‑71 (MQ=255) gaCGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgat < 2:72660‑M2/90‑73 (MQ=255) gaCGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgat < 1:154845‑M2/90‑73 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattt < 1:98699‑M2/90‑75 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattt < 2:96234‑M2/90‑75 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattt < 1:380335‑M2/90‑75 (MQ=255) ttAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaa < 1:130984‑M2/90‑87 (MQ=255) ttAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaa < 2:90174‑M2/90‑87 (MQ=255) ttAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaa > 2:149283‑M2/1‑4 (MQ=255) ttAGggaaggtgcgaataaacggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaa > 1:205581‑M2/1‑4 (MQ=255) aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 2:353595‑M2/1‑2 (MQ=255) aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 1:278691‑M2/1‑2 (MQ=255) aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 1:407474‑M2/1‑2 (MQ=255) aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 1:432195‑M2/1‑2 (MQ=255) | TATTTGCCTCGGAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGCCTTTTCCTGGCATCGTTTCTTGCGGAAATGGCGCAGACCGACAT > NZ_CP009273/3628980‑3629150 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |