| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 71 (0.910) | 29/160 | 0.8 | 45.8% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | 84 (1.070) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
ACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/360191‑360104‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTG < NZ_CP009273/360286‑360198 ACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGTCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAA > 1:1996898/1‑90ACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAA > 1:53397/1‑90ACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAA > 1:1757761/1‑90ACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGGGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAA > 1:787500/1‑90ACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGGGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAA > 1:2262121/1‑90ACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGGGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAA > 1:2166194/1‑90 AATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATT‑C > 2:1405992/1‑90 AATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATT‑C > 1:1260809/1‑90 AATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATT‑C > 1:2196348/1‑90 AATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATT‑C > 1:216281/1‑90 AATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATT‑C > 1:1776995/1‑90 GCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGATGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATT‑CCCCAG > 2:2233204/1‑90 GGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGGCATAAACTCCCAGGAATTAATT‑CCCCAGGCA > 1:319019/1‑90 TTGAAGGTTGCGAAGCAAGGGCCGGGGGGGGGGGGGGCGGGCCGCCCGCCATAAACTGCCAGGAATTAATT‑CCCCAGGCATCAAATAAAA < 2:2166194/90‑1 TTGCGAATCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGG > 2:1347183/1‑90 TTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGG > 2:537905/1‑90 TTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGG > 1:79879/1‑90 TTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGG > 1:2374736/1‑90 GCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCT > 2:1060310/1‑90 AACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGA > 1:1554609/1‑90 ACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAA > 1:36171/1‑90 ggggGGGGGGGGGCCAGGCCCCCCGCCATAAACTGCCAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTG < 2:2411174/86‑1 GAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGG > 1:2411174/1‑90 GGTGGGGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCT > 1:2150338/1‑90 ggggGGGAAGGCCCCCCGCCATAAACTGCCAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTT < 2:2196348/86‑1 TGGCGGTCAGGACGCCCGCCATAAACTGCCAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTT > 1:1157043/1‑90 TGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTT > 1:1898016/1‑90 TGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTT > 1:840150/1‑90 TGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTT > 2:1318097/1‑90 GGCGAGCAGGACGCCCGCCATAAACTGCCAGGAATTAATT‑C > 1:840780/1‑41 GGCGAGCAGGACGCCCGCCATAAACTGCCAGGAATTAATT‑C < 2:840780/41‑1 ggGGGCGGGCCCCCCGCCATAAACTGCCAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCG < 2:2008115/88‑1 GGGCAGGCCCCCCGCCATAAACTGCCAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTT < 2:79879/90‑1 GGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGT > 2:87486/1‑90 GGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTT > 1:1199536/1‑90 GGCAGGACGCCCGCCATAAACTGCCAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTT > 1:2008115/1‑90 ggcCGCCCGCCATAAACTGCCAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATC < 2:257246/87‑1 GGACGCCCGCCATAAACTGCCAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATC > 1:363143/1‑90 GGACGCCCGCCATAAACTGCCAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATC > 1:2513495/1‑90 ATAAACTGCCAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTC < 1:1555112/90‑1 ATAAACTGCCAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTC < 2:1407496/90‑1 ACTGCCAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTG < 1:1318097/90‑1 TGCCAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAA < 1:1347183/90‑1 GCCAGGAATTAATT‑CCCCAGGCATCAAATAAAACTAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTG > 1:500386/1‑87 GCCAGGAATTAATT‑CCCCAGGCATCAAATAAAACTAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTG < 2:500386/87‑1 GCCAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAAC > 2:1442295/1‑90 GCCAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAAC > 2:1768740/1‑90 GCCAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAAC > 2:1062764/1‑90 GCCAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAAC > 2:207956/1‑90 GCCAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAAC > 1:2230672/1‑90 CAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC < 2:319019/90‑1 CAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC < 2:440119/90‑1 CAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC < 2:787500/90‑1 CAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC < 2:773811/90‑1 CAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC < 2:2262121/90‑1 CAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC < 2:2150338/90‑1 CAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC < 2:1848823/90‑1 CAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC < 2:1260809/90‑1 CAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC < 2:1199536/90‑1 CAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC < 1:884626/90‑1 CAGGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC < 1:1062764/90‑1 GGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTC < 2:36171/90‑1 GGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTC < 2:53397/90‑1 GGAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTC < 1:1405992/90‑1 GAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC > 2:818630/1‑87 GAATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC < 1:818630/87‑1 ATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCC < 1:1127310/90‑1 ATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCC < 2:363143/90‑1 ATTAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCC < 1:537905/90‑1 TTAATTCCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCC < 1:87486/90‑1 TAATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTG > 2:458493/1‑90 ACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/360191‑360104‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATT‑CCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTG < NZ_CP009273/360286‑360198 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |