| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 1972818 = | 3 (0.040) | 92 (1.180) | 50/160 | 0.1 | 96.8% | intergenic (‑364/‑416) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| ? | NZ_CP009273 | = 2096424 | NA (NA) | intergenic (‑68/+3) | BW25113_RS10605/wbbL | IS5‑like element IS5 family transposase/N‑acetylglucosaminyl‑diphospho‑decaprenol L‑rhamnosyltransferase WbbL | |||||
TTTATAGCAGATGATTATTTACGGTGAGTTATTTTGACTGTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/1972905‑1972818‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTT < NZ_CP009273/2096424‑2096342 TTTATAGCAGATGATTATTTACGGTGAGTTATTTTGACTGTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGG > 2:1422562/1‑90 TATAGCAGATGATTATTTACGGTGAGTTATTTTGACTGTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAA < 1:801089/90‑1 TATAGCAGATGATTATTTACGGTGAGTTATTTTGACTGTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAA < 1:2433722/90‑1 TATAGCAGATGATTATTTACGGTGAGTTATTTTGACTGTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAA > 1:744137/1‑90 ATAGCAGATGATTATTTACGGTGAGTTATTTTGACTGTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAG > 1:1985044/1‑90 TAGCAGATGATTATTTACGGTGAGTTATTTTGACTGTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGG > 1:1907518/1‑90 AGCAGATGATTATTTACGGTGAGTTATTTTGACTGTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGT > 1:19960/1‑90 GCAGATGATTATTTACGGTGAGTTATTTTGACTGTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTG < 2:2444007/90‑1 GATGATTATTTACGGTGAGTTATTTTGACTGTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGA > 2:2110614/1‑90 GATGATTATTTACGGTGAGTTATTTTGACTGTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGA > 1:2152820/1‑90 GATGATTATTTACGGTGAGTTATTTTGACTGTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGA > 1:1911213/1‑90 TGATTATTTACGGTGAGTTATTTTGACTGTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAAC < 2:485427/90‑1 GATTATTTACGGTGAGTTATTTTGACTGTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACA < 1:1055624/90‑1 ATTATTTACGGTGAGTTATTTTGACTGTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAA < 2:2125617/90‑1 ATTATTTACGGTGAGTTATTTTGACTATGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAA > 2:1714048/1‑79 ATTATTTACGGTGAGTTATTTTGACTATGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAA < 1:1714048/79‑1 TTATTTACGGTGAGTTATTTTGACTGTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAG > 2:1556117/1‑90 TTACGGTGAGTTATTTTGACTGTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCC < 1:988107/90‑1 TTACGGTGAGTTATTTTGACTGTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCC < 1:2110614/90‑1 TTACGGTGAGTTATTTTGACTGTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCC < 1:403106/90‑1 TTACGGTGAGTTATTTTGACTGTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCC < 1:2441137/90‑1 TTACGGTGAGTTATTTTGACTGTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCC < 2:1907518/90‑1 TTACGGTGAGTTATTTTGACTGTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCC < 2:1911213/90‑1 TACGGTGAGTTATTTTGACTGTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCT > 2:135434/1‑90 TACGGTGAGTTATTTTGACTGTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCT > 1:2304707/1‑90 TACGGTGAGTTATTTTGACTGTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCT < 2:764363/90‑1 CGGTGAGTTATTTTGACTGTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGA > 2:1180029/1‑90 GGTGAGTTATTTTGACTGTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGAT < 1:1353116/90‑1 GTGAGTTATTTTGACTGTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATA < 1:1556117/90‑1 GTGAGTTATTTTGACTGTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCT > 2:997092/1‑86 GTGAGTTATTTTGACTGTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCT < 1:997092/86‑1 AGTTATTTTGACTGTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGA < 2:19960/90‑1 AGTTATTTTGACTGTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGGCCCTGATATGA > 2:2026533/1‑90 TTATTTTGACTGTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGA < 1:986195/90‑1 GACTGTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGT < 2:885498/70‑1 GACTGTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGT > 1:885498/1‑70 TGTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT < 2:744137/90‑1 GTGCGCAACATCTCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGGGATCATGTTTGTC > 1:576715/1‑90 GTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTC > 2:1598921/1‑90 GTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGAT > 1:1941157/1‑80 GTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCT > 1:413571/1‑70 GTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCT < 2:413571/70‑1 GTGCGCAACATCCCATTCC‑GATTATTCCTGTTTCATTTTTCCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGAT < 2:1941157/80‑1 TGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCT < 1:1675363/69‑1 TGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCT > 2:1675363/1‑69 TGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCT > 2:1406424/1‑69 TGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCT < 1:2171756/69‑1 TGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCT < 1:1406424/69‑1 TGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCT > 2:2171756/1‑69 TGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGT < 1:53411/65‑1 TGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGT > 2:53411/1‑65 ACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGA < 1:2302365/90‑1 TCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCC > 1:1979700/1‑90 TCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCC > 2:1195861/1‑90 TCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCC > 2:986655/1‑90 TCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGT < 2:309347/56‑1 TCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGT > 1:309347/1‑56 CCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCA < 1:1598921/90‑1 tCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGGGATCATGTTTGTCATCTGGAGCCAT < 2:576715/89‑1 CCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCAT < 1:1195861/90‑1 CCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCAT < 2:1815105/90‑1 CCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCAT < 1:1762316/90‑1 CCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCAT < 2:2304707/90‑1 CCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCAT > 1:1037921/1‑90 CATTTCGGATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCAT < 2:1453489/90‑1 TTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGA > 2:1552078/1‑90 TTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT < 2:1480809/74‑1 TTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT > 1:1480809/1‑74 TC‑GATTATTCCAGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGA < 2:732691/80‑1 TC‑GATTATTCCAGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGA > 1:732691/1‑80 C‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACA < 2:1540084/90‑1 C‑GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACA > 2:66316/1‑90 GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGC > 2:385961/1‑80 GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGC < 1:385961/80‑1 ATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGG < 2:2152820/90‑1 ATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGG < 1:1180029/90‑1 TATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT < 1:1361896/90‑1 TATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT < 2:420747/90‑1 ATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTT > 2:2491108/1‑90 TGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCA > 2:1627939/1‑90 GTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCAT > 1:588607/1‑90 GTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCAT > 2:101877/1‑73 GTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCAT < 1:101877/73‑1 TTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATG < 1:135434/90‑1 TTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATG < 1:66316/90‑1 ATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCT > 1:2485488/1‑60 ATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCT < 2:2485488/60‑1 TTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCA < 1:725047/90‑1 TTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCA < 1:1622835/90‑1 TTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTT < 2:381605/90‑1 CTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGA > 1:2410777/1‑52 CTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGA < 2:2410777/52‑1 TTTATAGCAGATGATTATTTACGGTGAGTTATTTTGACTGTGCGCAACATCCCATTTC‑GATTATTCCTGTTTCATTTTTGCTTGCTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/1972905‑1972818‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTT < NZ_CP009273/2096424‑2096342 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |