| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 1972818 = | 3 (0.040) | 92 (1.180) | 50/160 | 0.1 | 96.8% | intergenic (‑364/‑416) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| ? | NZ_CP009273 | = 2096424 | NA (NA) | intergenic (‑68/+3) | BW25113_RS10605/wbbL | IS5‑like element IS5 family transposase/N‑acetylglucosaminyl‑diphospho‑decaprenol L‑rhamnosyltransferase WbbL | |||||
Only 100 of 163 total aligned reads displayed.
CACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAA > NZ_CP009273/1972730‑1972905 | cacaAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgct < 1:2269452/90‑1 (MQ=255) aagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTagcaa < 2:381605‑M1/7‑1 (MQ=255) aaCACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGgga < 1:307652‑M1/90‑4 (MQ=255) acacTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaa < 2:1354522‑M1/90‑5 (MQ=255) aCTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaata > 1:527790‑M1/1‑76 (MQ=255) aCTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaa < 1:1589607‑M1/80‑5 (MQ=255) catgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGaaa < 1:135434‑M1/19‑1 (MQ=255) catgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGaaa < 1:66316‑M1/19‑1 (MQ=255) cTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataa > 1:1187849‑M1/1‑75 (MQ=255) atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAAc > 1:588607‑M1/71‑90 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACa > 2:1627939‑M1/70‑90 (MQ=255) tAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggttcgaataagc > 2:2207734‑M1/1‑73 (MQ=255) tAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagc < 2:528335‑M1/90‑18 (MQ=255) tAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagc > 2:732335‑M1/1‑73 (MQ=255) tAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagc > 1:1254435‑M1/1‑73 (MQ=255) aCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcgg > 1:1836297‑M1/1‑71 (MQ=255) aCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcgg < 1:997345‑M1/90‑20 (MQ=255) aaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGaat > 2:2491108‑M1/65‑90 (MQ=255) cctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGaataat < 2:2152820‑M1/29‑1 (MQ=255) cctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGaataat < 1:1180029‑M1/29‑1 (MQ=255) tgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCg < 2:1540084‑M1/31‑1 (MQ=255) tctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGaaa > 2:1552078‑M1/57‑90 (MQ=255) taAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattcttc < 1:832774‑M1/90‑31 (MQ=255) aGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctc > 1:320210‑M1/1‑58 (MQ=255) gTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcg < 2:1300595‑M1/90‑34 (MQ=255) atggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAAc < 1:101877‑M1/20‑1 (MQ=255) atggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg > 1:1037921‑M1/54‑90 (MQ=255) atggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg < 2:2304707‑M1/37‑1 (MQ=255) atggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg < 1:1762316‑M1/37‑1 (MQ=255) tggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATggg < 1:1598921‑M1/38‑1 (MQ=255) ggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGa > 2:986655‑M1/52‑90 (MQ=255) ggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGa > 2:1195861‑M1/52‑90 (MQ=255) ggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGa > 1:1979700‑M1/52‑90 (MQ=255) cATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTag > 1:2027633/1‑55 (MQ=255) cATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTTGggaaggtgcgaataagcggggaaattcttctcggc > 2:240808‑M1/1‑55 (MQ=255) cATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcggc > 1:2297311‑M1/1‑55 (MQ=255) cATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcggc > 2:598202‑M1/1‑55 (MQ=255) cATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcggc > 1:1498628‑M1/1‑55 (MQ=255) cATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcggc > 1:231380‑M1/1‑55 (MQ=255) gctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATc > 2:385961‑M1/51‑80 (MQ=255) tccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTag < 2:2410777‑M1/4‑1 (MQ=255) tccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACTGGAATAATCGa > 1:732691‑M1/49‑80 (MQ=255) tccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGt < 1:2302365‑M1/42‑1 (MQ=255) agatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAAt < 2:2485488‑M1/15‑1 (MQ=255) agatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAAt > 1:2485488‑M1/46‑60 (MQ=255) tgttttgGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcggctgactcag > 1:1455786‑M1/1‑47 (MQ=255) ttttgGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtc < 1:2380117‑M1/90‑46 (MQ=255) ttttgGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtc < 2:1254435‑M1/90‑46 (MQ=255) tttgGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtca > 1:2466952‑M1/1‑44 (MQ=255) acaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGaaa < 2:1480809‑M1/34‑1 (MQ=255) acaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGaaa > 1:1480809‑M1/41‑74 (MQ=255) acaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcaca < 2:744137‑M1/50‑1 (MQ=255) gggTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcattt > 2:1878614‑M1/1‑41 (MQ=255) gggTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaa < 2:48012‑M1/45‑5 (MQ=255) gggTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaa > 1:48012‑M1/1‑41 (MQ=255) gtATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatt < 2:1597811‑M1/90‑54 (MQ=255) gtATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatt > 1:297287‑M1/1‑37 (MQ=255) tATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattctt > 1:723181‑M1/1‑36 (MQ=255) tATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattctt < 2:723181‑M1/65‑30 (MQ=255) tATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattctt > 1:2143506‑M1/1‑36 (MQ=255) atctcatatcagggacttgttcgcaccttccCTAGCAAGGAAAAATGAAACAGGAATAATCGGAATGGGATGTTGCGcac < 2:1941157‑M1/49‑1 (MQ=255) tctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATaa < 1:986195‑M1/60‑1 (MQ=255) tcatatcagggccttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACt > 2:2026533‑M1/29‑90 (MQ=255) tcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACt < 2:19960‑M1/62‑1 (MQ=255) cAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcggctgactc > 2:2253920‑M1/1‑31 (MQ=255) cAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcggctgactc < 1:2253920‑M1/72‑42 (MQ=255) atcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCAcc < 1:1353116‑M1/66‑1 (MQ=255) tcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCg > 2:1180029‑M1/24‑90 (MQ=255) tGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcat > 1:1541728‑M1/1‑26 (MQ=255) gTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttg > 1:1870423‑M1/1‑25 (MQ=255) gTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttg > 1:236059‑M1/1‑25 (MQ=255) agggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcac < 2:413571‑M1/49‑1 (MQ=255) agggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGca < 1:2171756‑M1/48‑1 (MQ=255) agggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGca < 1:1406424‑M1/48‑1 (MQ=255) agggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGca > 2:1406424‑M1/22‑69 (MQ=255) agggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTa < 2:764363‑M1/69‑1 (MQ=255) gggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTaa < 1:988107‑M1/70‑1 (MQ=255) gggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTaa < 1:403106‑M1/70‑1 (MQ=255) gggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTaa < 1:2110614‑M1/70‑1 (MQ=255) gggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTaa < 2:1907518‑M1/70‑1 (MQ=255) acttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGa < 2:309347‑M1/39‑1 (MQ=255) acttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGca > 2:53411‑M1/18‑65 (MQ=255) acttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGca < 1:53411‑M1/48‑1 (MQ=255) acttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTc < 2:885498‑M1/53‑1 (MQ=255) cttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaataa > 2:1556117‑M1/17‑90 (MQ=255) ttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaataat < 2:2125617‑M1/75‑1 (MQ=255) gttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatca < 2:485427‑M1/77‑1 (MQ=255) ttttCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttt > 1:1429392‑M1/1‑15 (MQ=255) ttttCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagt > 1:1628381‑M1/1‑15 (MQ=255) ttttCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagt < 2:1628381‑M1/59‑45 (MQ=255) ttttCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagt > 1:40701‑M1/1‑15 (MQ=255) tcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatcatc > 1:1911213‑M1/12‑90 (MQ=255) tcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatcatc > 2:2110614‑M1/12‑90 (MQ=255) cttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCtat > 1:1985044‑M1/6‑90 (MQ=255) ttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCATAGTCAAAATAACTCACCGTAaataat < 1:1714048‑M1/75‑1 (MQ=255) ttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCATAGTCAAAATAACTCACCGTAaataat > 2:1714048‑M1/5‑79 (MQ=255) ttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCtata < 1:2433722‑M1/86‑1 (MQ=255) ttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCtata > 1:744137‑M1/5‑90 (MQ=255) acgctaGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccg > 2:1183243‑M1/1‑7 (MQ=255) ccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATaaa > 2:1422562‑M1/3‑90 (MQ=255) | CACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAA > NZ_CP009273/1972730‑1972905 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |