| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 1972821 | 2 (0.030) | 68 (0.870) | 36/160 | 0.5 | 97.1% | intergenic (‑367/‑413) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| ? | NZ_CP009273 | 2095230 = | NA (NA) | pseudogene (1/354 nt) | wbbL | N‑acetylglucosaminyl‑diphospho‑decaprenol L‑rhamnosyltransferase WbbL | |||||
AACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/1972735‑1972821‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCG > NZ_CP009273/2095230‑2095312 AACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGA < 1:307652/90‑1AACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGA > 2:201881/1‑90 ACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAA < 2:1354522/90‑1 ACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATA > 1:527790/1‑90 ACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAA < 1:1589607/80‑1 ACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAA > 2:1589607/1‑80 CTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAA > 1:1187849/1‑90 TAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTTCGAATAAGC > 2:2207734/1‑90 TAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGC > 1:1254435/1‑90 TAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGC < 2:528335/90‑1 TAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGC > 2:732335/1‑90 ACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGG < 1:997345/90‑1 ACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGG > 1:1836297/1‑90 ACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGG > 1:2595/1‑90 AATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAA > 2:2380117/1‑90 ATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTT > 2:500315/1‑90 ATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑‑AAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCT > 2:968265/1‑90 TAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTC < 1:832774/90‑1 AGTCATACTTTTGTTTTGTGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTC > 2:1282028/1‑90 AGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTC > 2:27135/1‑90 AGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTC > 1:320210/1‑90 GTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCG < 2:1300595/90‑1 CATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTTGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGC > 2:240808/1‑90 CATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGC > 2:598202/1‑90 CATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGC > 1:2297311/1‑90 CATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGC > 1:231380/1‑90 CATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGC < 1:2338369/90‑1 CATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGC > 1:1498628/1‑90 CATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTAGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGC < 1:2060743/90‑1 ATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAACCGGGGAAATTCTTCTCGGCT > 1:715057/1‑90 CTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGAC < 1:1781785/90‑1 TTTTGTTTTGTGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACT < 1:1282028/90‑1 TGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAG > 1:1455786/1‑90 TGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAG > 1:2291464/1‑90 TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTC < 1:2380117/90‑1 TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTC < 2:1254435/90‑1 TTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCA > 1:2466952/1‑90 TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATT < 2:2297311/90‑1 GGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTT > 2:1878614/1‑90 GGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTT > 2:749888/1‑90 GGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAA < 2:48012/45‑1 GGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAA > 1:48012/1‑45 TGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCAT < 2:1187849/90‑1 GTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATT < 2:320210/90‑1 GTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATT < 2:1597811/90‑1 GTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATT > 1:297287/1‑90 GTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATT < 1:500315/90‑1 TATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTT < 2:723181/65‑1 TATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTT > 1:2143506/1‑65 TATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTT < 2:2143506/65‑1 TATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTT > 1:723181/1‑65 CAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTC < 1:2253920/72‑1 CAATCTGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTC > 2:2253920/1‑72 TGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCAT > 1:1541728/1‑78 TGTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCAT < 2:1541728/78‑1 GTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTG > 1:236059/1‑90 GTTAAAAAGTTTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTG > 1:1870423/1‑90 TTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTT > 1:1429392/1‑90 TTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTT > 1:2229251/1‑90 TTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTT > 1:1413797/1‑90 TTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTT > 1:1500569/1‑90 TTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGT < 2:40701/59‑1 TTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGT < 2:1628381/59‑1 TTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGT > 1:1628381/1‑59 TTTTCGCTACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGT > 1:40701/1‑59 ACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCG > 1:146531/1‑90 ACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCG > 2:1417231/1‑90 ACGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCG > 2:1183243/1‑90 AACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/1972735‑1972821‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCG > NZ_CP009273/2095230‑2095312 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |