| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 1972821 | 2 (0.030) | 68 (0.870) | 36/160 | 0.5 | 97.1% | intergenic (‑367/‑413) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| ? | NZ_CP009273 | 2095230 = | NA (NA) | pseudogene (1/354 nt) | wbbL | N‑acetylglucosaminyl‑diphospho‑decaprenol L‑rhamnosyltransferase WbbL | |||||
Only 100 of 164 total aligned reads displayed.
AACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATC > NZ_CP009273/1972735‑1972910 | aagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTagcaa < 2:381605‑M1/7‑1 (MQ=255)aaCACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGgga > 2:201881‑M1/1‑87 (MQ=255)aaCACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGgga < 1:307652‑M1/90‑4 (MQ=255) acacTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaa < 2:1354522‑M1/90‑5 (MQ=255) aCTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaa > 2:1589607‑M1/1‑76 (MQ=255) aCTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaa < 1:1589607‑M1/80‑5 (MQ=255) catgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGaaa < 1:135434‑M1/19‑1 (MQ=255) catgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGaaa < 1:66316‑M1/19‑1 (MQ=255) cTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataa > 1:1187849‑M1/1‑75 (MQ=255) atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAAc > 1:588607‑M1/71‑90 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACa > 2:1627939‑M1/70‑90 (MQ=255) tAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggttcgaataagc > 2:2207734‑M1/1‑73 (MQ=255) tAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagc > 1:1254435‑M1/1‑73 (MQ=255) tAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagc < 2:528335‑M1/90‑18 (MQ=255) tAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagc > 2:732335‑M1/1‑73 (MQ=255) aCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcgg > 1:1836297‑M1/1‑71 (MQ=255) aCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcgg < 1:997345‑M1/90‑20 (MQ=255) aaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGaat > 2:2491108‑M1/65‑90 (MQ=255) accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGaata < 2:420747‑M1/27‑1 (MQ=255) aaTGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaa > 2:2380117‑M1/1‑66 (MQ=255) cctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGaataat < 1:1180029‑M1/29‑1 (MQ=255) tctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑Gaaa > 2:1552078‑M1/57‑90 (MQ=255) aGTCATACTTTTGTTTTGTGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctc > 2:1282028‑M1/1‑58 (MQ=255) aGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctc > 1:320210‑M1/1‑58 (MQ=255) atggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAAc < 1:101877‑M1/20‑1 (MQ=255) atggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCCGAAATg < 2:1453489‑M1/37‑1 (MQ=255) atggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATgg > 1:1037921‑M1/54‑90 (MQ=255) atggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATgg < 2:1815105‑M1/37‑1 (MQ=255) atggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATgg < 1:1762316‑M1/37‑1 (MQ=255) tggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATggg < 1:1598921‑M1/38‑1 (MQ=255) ggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATGGGa > 2:1195861‑M1/52‑90 (MQ=255) ggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATGGGa > 2:986655‑M1/52‑90 (MQ=255) ggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATGGGa > 1:1979700‑M1/52‑90 (MQ=255) cATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTag > 1:2027633/1‑55 (MQ=255) cATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTag < 2:2027633/55‑1 (MQ=255) cATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTTGggaaggtgcgaataagcggggaaattcttctcggc > 2:240808‑M1/1‑55 (MQ=255) cATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcggc < 1:2338369‑M1/90‑36 (MQ=255) cATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcggc > 1:231380‑M1/1‑55 (MQ=255) cATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcggc > 2:598202‑M1/1‑55 (MQ=255) gctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATc < 1:385961‑M1/30‑1 (MQ=255) gctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATc > 2:385961‑M1/51‑80 (MQ=255) tccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACTGGAATAATC‑Ga > 1:732691‑M1/49‑80 (MQ=255) tccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATGGGATGt < 1:2302365‑M1/42‑1 (MQ=255) agatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAAt > 1:2485488‑M1/46‑60 (MQ=255) agatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAAt < 2:2485488‑M1/15‑1 (MQ=255) tgttttgGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcggctgactcag > 1:1455786‑M1/1‑47 (MQ=255) tgttttgGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcggctgactcag > 1:2291464‑M1/1‑47 (MQ=255) ttttgGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtc < 1:2380117‑M1/90‑46 (MQ=255) gacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATGGGATGTTGCGcac > 2:1598921‑M1/42‑90 (MQ=255) acaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑Gaaa > 1:1480809‑M1/41‑74 (MQ=255) acaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑Gaaa < 2:1480809‑M1/34‑1 (MQ=255) acaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATGGGATGTTGCGcaca < 2:744137‑M1/50‑1 (MQ=255) tgGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatt < 2:2297311‑M1/90‑49 (MQ=255) gggTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcattt > 2:1878614‑M1/1‑41 (MQ=255) gggTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaa > 1:48012‑M1/1‑41 (MQ=255) tgtATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcat < 2:1187849‑M1/90‑53 (MQ=255) gtATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatt < 1:500315‑M1/90‑54 (MQ=255) gtATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatt > 1:297287‑M1/1‑37 (MQ=255) tATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattctt < 2:2143506‑M1/65‑30 (MQ=255) tATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattctt < 2:723181‑M1/65‑30 (MQ=255) tATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattctt > 1:723181‑M1/1‑36 (MQ=255) tctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATGGGATGTTGCGCACAGTCAAAATaa < 1:986195‑M1/60‑1 (MQ=255) tcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATGGGATGTTGCGCACAGTCAAAATAACt < 2:19960‑M1/62‑1 (MQ=255) cAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcggctgactc < 1:2253920‑M1/72‑42 (MQ=255) atcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATGGGATGTTGCGCACAGTCAAAATAACTCAcc < 1:1353116‑M1/66‑1 (MQ=255) tcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATGGGATGTTGCGCACAGTCAAAATAACTCACCg > 2:1180029‑M1/24‑90 (MQ=255) tGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcat < 2:1541728‑M1/78‑53 (MQ=255) tGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcat > 1:1541728‑M1/1‑26 (MQ=255) agggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATGGGATGTTGCGcac < 2:413571‑M1/49‑1 (MQ=255) agggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATGGGATGTTGCGca < 1:2171756‑M1/48‑1 (MQ=255) agggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATGGGATGTTGCGca < 1:1406424‑M1/48‑1 (MQ=255) agggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATGGGATGTTGCGca > 2:2171756‑M1/22‑69 (MQ=255) agggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATGGGATGTTGCGca > 2:1675363‑M1/22‑69 (MQ=255) agggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATGGGATGTTGCGCACAGTCAAAATAACTCAc < 1:997092‑M1/65‑1 (MQ=255) agggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTa > 2:135434‑M1/22‑90 (MQ=255) agggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTa < 2:764363‑M1/69‑1 (MQ=255) gggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTaa < 1:2441137‑M1/70‑1 (MQ=255) gggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTaa < 2:1911213‑M1/70‑1 (MQ=255) gggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTaa < 1:2110614‑M1/70‑1 (MQ=255) acttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATGGGa < 2:309347‑M1/39‑1 (MQ=255) acttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATGGGATGTTGCGca < 1:53411‑M1/48‑1 (MQ=255) acttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATGGGATGTTGCGca > 2:53411‑M1/18‑65 (MQ=255) acttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATGGGATGTTGCGCACAGTc < 2:885498‑M1/53‑1 (MQ=255) acttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATGGGATGTTGCGCACAGTc > 1:885498‑M1/18‑70 (MQ=255) ttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaataat < 2:2125617‑M1/75‑1 (MQ=255) gttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatca < 2:485427‑M1/77‑1 (MQ=255) ttttCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttt > 1:1500569‑M1/1‑15 (MQ=255) ttttCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttt > 1:1429392‑M1/1‑15 (MQ=255) ttttCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagt > 1:1628381‑M1/1‑15 (MQ=255) ttttCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagt > 1:40701‑M1/1‑15 (MQ=255) tcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatcatc > 1:2152820‑M1/12‑90 (MQ=255) tcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatcatc > 1:1911213‑M1/12‑90 (MQ=255) caccttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGc < 2:2444007‑M1/82‑1 (MQ=255) accttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCt > 1:19960‑M1/8‑90 (MQ=255) ccttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCta > 1:1907518‑M1/7‑90 (MQ=255) ttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATGGGATGTTGCGCATAGTCAAAATAACTCACCGTAaataat < 1:1714048‑M1/75‑1 (MQ=255) ttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCtata > 1:744137‑M1/5‑90 (MQ=255) ttccCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCtata < 1:2433722‑M1/86‑1 (MQ=255) acgctaGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccg > 2:1417231‑M1/1‑7 (MQ=255) gcaagcaaAAATGAAACAGGAATAATC‑GAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATc < 1:832633/90‑1 (MQ=255) | AACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATC‑GAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATC > NZ_CP009273/1972735‑1972910 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |