| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 2282398 = | NA (NA) | 148 (1.890) | 56/160 | 0.1 | 100% | pseudogene (3/2532 nt) | yejO | autotransporter YejO |
| ? | NZ_CP009273 | = 3629062 | 0 (0.000) | coding (862/1053 nt) | yhiM | DUF2776 domain‑containing protein | |||||
Only 100 of 149 total aligned reads displayed.
TTATTCTTATTTGCCTCGGAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGCCTTTTCCTGGCATCGTTTCTTGCGGAAATGGCGCAGACCGACAT > NZ_CP009273/3628973‑3629150 | ttattCTTATTTGCCTCGGAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAg > 1:1703399/1‑90 (MQ=255) ttCTTATTTGCCTCGGAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGgga > 2:939315‑M2/1‑87 (MQ=255) tCTTATTTGCCTCGGAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaa > 1:2489045‑M2/1‑86 (MQ=255) ttATTTGCCTCGGAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaagg < 2:1803165‑M2/90‑7 (MQ=255) tATTTGCCTCGGAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggt > 2:1323552‑M2/1‑83 (MQ=255) tATTTGCCTCGGAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggt < 1:594633‑M2/90‑8 (MQ=255) tATTTACCTCGGAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggt < 1:1586067‑M2/90‑8 (MQ=255) gCCTCGGAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaa < 1:317604‑M2/90‑13 (MQ=255) gCCTCGGAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaa < 2:1168645‑M2/90‑13 (MQ=255) gCCTCGGAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaa < 1:1939774‑M2/90‑13 (MQ=255) gCCTCGGAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaa < 1:2266570‑M2/90‑13 (MQ=255) cTCGGAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaata > 2:2146935‑M2/1‑76 (MQ=255) ggAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagc > 1:2107114‑M2/1‑73 (MQ=255) gAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcg < 2:2154771‑M2/90‑19 (MQ=255) gATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggt > 2:1388000‑M2/1‑68 (MQ=255) gATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggt < 1:1388000‑M2/75‑8 (MQ=255) cTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaat > 1:959419‑M2/1‑65 (MQ=255) tACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattctt > 1:657106‑M2/1‑61 (MQ=255) aGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctc < 2:1509902‑M2/90‑33 (MQ=255) aGCATATTCTCAAAAGTCTGGATACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctc < 1:772456‑M2/90‑33 (MQ=255) gCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcg < 2:191133‑M2/90‑34 (MQ=255) gCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcg < 2:2309730‑M2/90‑34 (MQ=255) gCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcg < 1:874263‑M2/90‑34 (MQ=255) gCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtg > 2:168183‑M2/1‑57 (MQ=255) gCATATTCTCAAAAGTCTGGCTACTGGAACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcg < 1:1514831‑M2/90‑34 (MQ=255) atatTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggc > 2:1694905‑M2/1‑55 (MQ=255) atatTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggc < 2:1002875‑M2/90‑36 (MQ=255) atatTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggc > 2:888712‑M2/1‑55 (MQ=255) atatTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggc < 2:2398887‑M2/90‑36 (MQ=255) atatTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattattctcggc < 2:115279‑M2/90‑36 (MQ=255) atatTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattattctcggc < 2:2225379‑M2/90‑36 (MQ=255) atatTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTAGTTAGggaaggtgcgaataagcggggaaattcttctcggc > 2:934965‑M2/1‑55 (MQ=255) atTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctg < 1:1177758‑M2/90‑38 (MQ=255) atTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctg < 2:541883‑M2/90‑38 (MQ=255) atTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctg < 2:2443378‑M2/90‑38 (MQ=255) atTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctg < 1:65459‑M2/90‑38 (MQ=255) atTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggc > 2:602489‑M2/1‑53 (MQ=255) atTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggc < 1:602489‑M2/88‑36 (MQ=255) atTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggt < 1:1486570‑M2/60‑8 (MQ=255) atTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggt > 2:1486570‑M2/1‑53 (MQ=255) ctcAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGtgaaggtgcgaataagcggggaaattcttctcggctgact > 2:901148‑M2/1‑50 (MQ=255) ctcAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattattctaggctgact < 1:1067755‑M2/90‑41 (MQ=255) tcAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactc > 2:317604‑M2/1‑49 (MQ=255) cAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactca < 2:1160591‑M2/90‑43 (MQ=255) aaaaGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcag < 2:950104‑M2/90‑44 (MQ=255) aaaaGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcag < 2:134413‑M2/90‑44 (MQ=255) aaaaGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcag < 1:139773‑M2/90‑44 (MQ=255) aaaaGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcag < 2:764207‑M2/90‑44 (MQ=255) aaaaGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcag < 2:3658‑M2/90‑44 (MQ=255) aaaaGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcag > 1:2319698‑M2/1‑47 (MQ=255) aaGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtc > 1:1829280‑M2/1‑45 (MQ=255) aaGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtc > 1:1002875‑M2/1‑45 (MQ=255) gTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggg < 1:435434‑M2/63‑21 (MQ=255) tCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatt < 1:1616199‑M2/90‑49 (MQ=255) ggCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttca > 2:157741‑M2/1‑39 (MQ=255) gCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcat > 2:2301324‑M2/1‑38 (MQ=255) cTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatt > 1:939358‑M2/1‑37 (MQ=255) tGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttctt < 2:2189201‑M2/90‑58 (MQ=255) tGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttctt < 2:947888‑M2/90‑58 (MQ=255) aCTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg > 2:1586067‑M2/1‑29 (MQ=255) cTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaattcttctcggctgacttagtcatttcatttctttatgtt < 2:2479338‑M2/90‑63 (MQ=255) cTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgt < 1:2349174‑M2/90‑63 (MQ=255) tATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttga < 2:1158913‑M2/90‑67 (MQ=255) tGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagc < 2:826455‑M2/90‑69 (MQ=255) ggAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagcc < 1:1236573‑M2/90‑70 (MQ=255) ggAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactc > 2:428522‑M2/1‑21 (MQ=255) ggAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactc < 1:428522‑M2/62‑42 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattt < 2:1762690‑M2/90‑75 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattt < 2:270552‑M2/90‑75 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattt < 2:2225633‑M2/90‑75 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattt < 1:2443919‑M2/90‑75 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattt < 2:1260956‑M2/90‑75 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattt < 1:941582‑M2/90‑75 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattt < 2:1934639‑M2/90‑75 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagc < 2:536255‑M2/84‑69 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttc < 1:2271610‑M2/74‑59 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttc < 1:2097583‑M2/74‑59 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggatgactaagtcatttcatttcttcatgtttgagccgattt < 2:199350‑M2/90‑75 (MQ=255) tACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttt < 2:2111807‑M2/90‑77 (MQ=255) gTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcc < 1:2127102‑M2/90‑82 (MQ=255) ttCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctccc < 1:1010634‑M2/90‑83 (MQ=255) ttCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctccc < 1:1854510‑M2/90‑83 (MQ=255) ttCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactaagtc < 1:827335‑M2/53‑46 (MQ=255) ttCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactaagtc > 2:827335‑M2/1‑8 (MQ=255) tAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa > 1:1737042‑M2/1‑3 (MQ=255) tAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa > 1:1124311‑M2/1‑3 (MQ=255) tAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa > 1:1507827‑M2/1‑3 (MQ=255) tAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa > 1:1620721‑M2/1‑3 (MQ=255) tAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa > 2:713085‑M2/1‑3 (MQ=255) tAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa > 2:2009237‑M2/1‑3 (MQ=255) tAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa > 1:2436242‑M2/1‑3 (MQ=255) aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 1:1803165‑M2/1‑2 (MQ=255) aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 2:116711‑M2/1‑2 (MQ=255) aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 1:2153447‑M2/1‑2 (MQ=255) aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 1:819961‑M2/1‑2 (MQ=255) aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 1:1163993‑M2/1‑2 (MQ=255) aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa < 1:1965182‑M2/89‑88 (MQ=255) aGggaaggtgcgaataagcggggaaattcttctcggatgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 1:2006229‑M2/1‑2 (MQ=255) gggaaggtgcgaataagcggggaaattcttctcgtctgactcagtcatttcatttcttcatgtttgagccgattttttc > 2:627545‑M2/1‑1 (MQ=255) gggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttc > 2:325664‑M2/1‑1 (MQ=255) | TTATTCTTATTTGCCTCGGAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGCCTTTTCCTGGCATCGTTTCTTGCGGAAATGGCGCAGACCGACAT > NZ_CP009273/3628973‑3629150 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |