| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 1972818 = | 0 (0.000) | 16 (0.770) | 13/166 | 0.4 | 100% | intergenic (‑364/‑416) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| ? | NZ_CP009273 | = 2096424 | NA (NA) | intergenic (‑68/+3) | BW25113_RS10605/wbbL | IS5‑like element IS5 family transposase/N‑acetylglucosaminyl‑diphospho‑decaprenol L‑rhamnosyltransferase WbbL | |||||
GTGAGTTATTTTGACTGTGCGCAACATCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/1972882‑1972818‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTA < NZ_CP009273/2096424‑2096341 GTGAGTTATTTTGACTGTGCGCAACATCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATA < 2:375788/90‑1 GTGCGCAACATCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATC < 1:367613/81‑1 GTGCGCAACATCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATC > 2:367613/1‑81 GTGCGCAACATCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATAT < 1:426743/75‑1 GTGCGCAACATCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATAT > 2:426743/1‑75 TGCGCAACATCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCA > 1:583866/1‑90 ACATCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGA < 2:583866/90‑1 TCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCC > 1:264336/1‑90 TCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCC > 1:387789/1‑90 CCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCAT > 1:379346/1‑90 CCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCAT < 2:161046/90‑1 CCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGGGAA > 1:90699/1‑41 CCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGGGAA < 2:90699/41‑1 GATTATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAG > 1:457100/1‑90 TATTCCTGTTTCATTTTTGCTTGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT < 1:325160/90‑1 TGCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTA > 1:465591/1‑90 GTGAGTTATTTTGACTGTGCGCAACATCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/1972882‑1972818‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTA < NZ_CP009273/2096424‑2096341 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |