New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NZ_CP009273 | 1972818 = | 0 (0.000) | 16 (0.770) | 13/166 | 0.4 | 100% | intergenic (‑364/‑416) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
? | NZ_CP009273 | = 2096424 | NA (NA) | intergenic (‑68/+3) | BW25113_RS10605/wbbL | IS5‑like element IS5 family transposase/N‑acetylglucosaminyl‑diphospho‑decaprenol L‑rhamnosyltransferase WbbL |
AAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATC > NZ_CP009273/1972734‑1972896 | taagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTagca > 1:465591‑M1/85‑90 (MQ=255) accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGaata < 1:325160‑M1/27‑1 (MQ=255) ctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATc > 1:457100‑M1/61‑90 (MQ=255) taAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattcttc < 1:81235‑M1/90‑31 (MQ=255) atggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg > 1:379346‑M1/54‑90 (MQ=255) atggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg < 2:161046‑M1/37‑1 (MQ=255) ggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGa > 1:264336‑M1/52‑90 (MQ=255) ggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGa > 1:387789‑M1/52‑90 (MQ=255) cATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcggc > 1:356543‑M1/1‑55 (MQ=255) tccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGt < 2:583866‑M1/42‑1 (MQ=255) tgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGca > 1:583866‑M1/43‑90 (MQ=255) tATTTAAATCTGTTAAAAAGTTTTTCGCTACGCTAGggaaggggcgaataagcggggaaattcttctcggctgactcactcattttattt > 2:361979‑M1/1‑36 (MQ=255) gatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcac > 2:367613‑M1/33‑81 (MQ=255) gatctcatatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcac < 1:367613‑M1/49‑1 (MQ=255) tCAATCTGTTAAAAAGTTTTTCGCTACTCTAGggaaggtgctaataagcggggaaattcttctcggctgactcagtcatttcatttcttc < 2:106039‑M1/90‑59 (MQ=255) atatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcac < 1:426743‑M1/49‑1 (MQ=255) atatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcac > 2:426743‑M1/27‑75 (MQ=255) tatcagggacttgttcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCAc < 2:375788‑M1/65‑1 (MQ=255) ttttCGCTACGCTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttt > 1:238420‑M1/1‑15 (MQ=255) ttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg > 1:90699‑M1/5‑41 (MQ=255) ttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg < 2:90699‑M1/37‑1 (MQ=255) | AAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATC > NZ_CP009273/1972734‑1972896 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |