New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 = 3144055105 (1.680)8 (0.180)
+ATTTTGCGTTTGTAATCAGTCTCG		 4/114 2.8 9.8% intergenic (+150/+122) yghA/exbD NADP(+)‑dependent aldehyde reductase/TonB system transport protein ExbD
?NZ_CP009273 = 3632715 104 (1.660)intergenic (+214/+30) pitA/uspB inorganic phosphate transporter PitA/universal stress protein UspB
Rejected: Frequency below/above cutoff threshold.

GATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP009273/3144020‑3144055
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCGGGCCAGTAAACTGACCCGCTCGAGAC  <  NZ_CP009273/3632715‑3632686
                                    ||||||||||||||||||||||||                              
GATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGCCAGTAAACTGACCCGCTCGAGAC  <  1:1129493/90‑1
GATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGCCAGTAAACTGACCCGCTCGAGAC  >  2:1129494/1‑90
          GCCTGATAAGGGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGC                             >  1:658679/1‑53
          GCCTGATAAGGGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGC                             <  2:658679/53‑1
          GCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGC                             >  1:338712/1‑53
          GCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGC                             <  2:338712/53‑1
              GATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATC                                       <  1:1409788/39‑1
              GATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATC                                       >  2:1409789/1‑39
                             TCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGCCAGTAAACTGACC            <  1:760774/51‑1
                             TCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGCCAGTAAACTGACC            >  2:760774/1‑51
                                    ||||||||||||||||||||||||                              
GATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP009273/3144020‑3144055
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCGGGCCAGTAAACTGACCCGCTCGAGAC  <  NZ_CP009273/3632715‑3632686

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.