| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3144055 | 105 (1.680) | 8 (0.180) +ATTTTGCGTTTGTAATCAGTCTCG |
4/114 | 2.8 | 9.8% | intergenic (+150/+122) | yghA/exbD | NADP(+)‑dependent aldehyde reductase/TonB system transport protein ExbD |
| ? | NZ_CP009273 | = 3632715 | 104 (1.660) | intergenic (+214/+30) | pitA/uspB | inorganic phosphate transporter PitA/universal stress protein UspB | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 121 total aligned reads displayed.
GGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAGATTTTGTAG > NZ_CP009273/3143966‑3144142 | ggCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1873522/1‑90 (MQ=255)ggCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCa < 2:9064/90‑1 (MQ=255)ggCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:444245/1‑90 (MQ=255)ggCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1530973/1‑90 (MQ=255) gAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTg < 1:233753/90‑1 (MQ=255) gAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTg < 2:716004/90‑1 (MQ=255) aaaCGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAg < 1:880458/90‑1 (MQ=255) ccGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGcc < 2:1701240/90‑1 (MQ=255) ccGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGACTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGcc < 2:1672541/90‑1 (MQ=255) cGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCg > 1:1240271/1‑90 (MQ=255) cGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCg > 1:1279716/1‑90 (MQ=255) gCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCgg < 1:280779/90‑1 (MQ=255) gCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCgg > 1:329918/1‑90 (MQ=255) gCCTACAAACGCATGAAGATTCAACATGTTGCAACAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCgg > 1:449819/1‑90 (MQ=255) tACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATg < 1:1092520/90‑1 (MQ=255) tACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATg < 2:1179926/90‑1 (MQ=255) aaaCGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGcgt < 2:71775/90‑1 (MQ=255) aaaCGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGcgt < 2:1279717/90‑1 (MQ=255) aaCGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGcgtc < 1:66804/90‑1 (MQ=255) cATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGa > 1:1508079/1‑90 (MQ=255) cATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGa > 1:827193/1‑90 (MQ=255) aTGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGaa < 2:1735472/90‑1 (MQ=255) gAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACg < 2:1127314/90‑1 (MQ=255) aaGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAg > 2:1353003/1‑62 (MQ=255) aaGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAg > 2:239436/1‑62 (MQ=255) aaGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAg < 1:1353002/62‑1 (MQ=255) aaGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAg < 1:239436/62‑1 (MQ=255) ttCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTa > 2:427991/1‑90 (MQ=255) ttCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTa > 1:1309229/1‑90 (MQ=255) aaCATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATcc < 1:563356/90‑1 (MQ=255) aCATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCg > 1:1099436/1‑90 (MQ=255) gTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAga < 2:137972/51‑2 (MQ=255) gTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGaa > 1:649753/1‑75 (MQ=255) gTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCt > 2:384424/1‑90 (MQ=255) ttGCAATAGATTTTGTAGGACTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGAGAACGCCTTATCCGGCCTa < 1:1771376/90‑1 (MQ=255) gCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACa < 1:50312/90‑1 (MQ=255) aaTAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACaaa < 1:1359540/90‑1 (MQ=255) aaTAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACaaa < 1:1785576/90‑1 (MQ=255) aTAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACg > 1:1062842/1‑71 (MQ=255) aTAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACg < 2:1062843/71‑1 (MQ=255) aGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGc > 2:1744213/1‑90 (MQ=255) gATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAattttgcgtttgtaatcagtctcgagcgggccagtaaactgacccgctcgagac > 2:1129494‑M1/1‑36 (MQ=255) gATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAattttgcgtttgtaatcagtctcgagcgggccagtaaactgacccgctcgagac < 1:1129493‑M1/90‑55 (MQ=255) aTTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCAc > 2:642746/1‑90 (MQ=255) ttttGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACg < 1:1108349/90‑1 (MQ=255) ttttGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACg > 1:236168/1‑90 (MQ=255) tttGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGa < 2:875255/90‑1 (MQ=255) tttGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGa < 2:1558336/90‑1 (MQ=255) tttGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGa < 2:502739/90‑1 (MQ=255) tttGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGa < 1:441777/90‑1 (MQ=255) ttGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGc > 1:1101125/1‑38 (MQ=255) ttGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATg < 1:173054/53‑1 (MQ=255) ttGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATg > 2:173054/1‑53 (MQ=255) ttGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCt > 1:749437/1‑67 (MQ=255) ttGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCt < 2:749437/67‑1 (MQ=255) ttGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGaa < 2:934547/90‑1 (MQ=255) ttGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGaa > 2:1348333/1‑90 (MQ=255) ttGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGaa < 2:329918/90‑1 (MQ=255) ttGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGaa < 2:1096589/90‑1 (MQ=255) ttGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGaa < 1:1744212/90‑1 (MQ=255) ttGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGaa < 1:642746/90‑1 (MQ=255) tGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAg < 2:1220714/90‑1 (MQ=255) ggCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATcc < 1:1572117/67‑1 (MQ=255) ggCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATcc > 2:1572118/1‑67 (MQ=255) gCCTGATAAGGGTAGCGCATCAGGCAattttgcgtttgtaatcagtctcgagc < 2:658679‑M1/53‑28 (MQ=255) gCCTGATAAGGGTAGCGCATCAGGCAattttgcgtttgtaatcagtctcgagc > 1:658679‑M1/1‑26 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCAattttgcgtttgtaatcagtctcgagc > 1:338712‑M1/1‑26 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCAattttgcgtttgtaatcagtctcgagc < 2:338712‑M1/53‑28 (MQ=255) cTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAAc < 2:236168/90‑1 (MQ=255) cTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAAc < 2:1240272/90‑1 (MQ=255) gATAAGCGTAGCGCATCAGGCAattttgcgtttgtaatc > 2:1409789‑M1/1‑22 (MQ=255) gATAAGCGTAGCGCATCAGGCAattttgcgtttgtaatc < 1:1409788‑M1/39‑18 (MQ=255) gATAAGCGTAGCGCATCAGGCATTGAGCCCCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACAt < 1:1523455/90‑1 (MQ=255) gATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAAc < 2:1852331/88‑1 (MQ=255) gATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACAt < 1:1698225/90‑1 (MQ=255) gATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACAt < 1:325231/90‑1 (MQ=255) tAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGt < 1:1009640/90‑1 (MQ=255) tAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGt < 1:1348332/90‑1 (MQ=255) tAAGCGAAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGt < 1:1827483/90‑1 (MQ=255) aaGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGtt < 2:406376/90‑1 (MQ=255) gTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCaa > 1:339990/1‑90 (MQ=255) gTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCaa > 2:1836264/1‑90 (MQ=255) tAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAAt < 2:293914/90‑1 (MQ=255) aGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATa > 1:870646/1‑90 (MQ=255) gcgcATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAg > 2:1724599/1‑90 (MQ=255) gcgcATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAg > 1:1186560/1‑90 (MQ=255) gcATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAGAt < 1:1877840/90‑1 (MQ=255) gcATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAGAt < 1:1067398/90‑1 (MQ=255) gcATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAGAt < 1:905227/90‑1 (MQ=255) gcATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAGAt < 1:745805/90‑1 (MQ=255) aTCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAGAttt > 1:1692002/1‑90 (MQ=255) aTCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAGAttt > 1:492657/1‑90 (MQ=255) tCAGGCAattttgcgtttgtaatcagtctcgagcgggccagtaaactgacc < 1:760774‑M1/51‑45 (MQ=255) tCAGGCAattttgcgtttgtaatcagtctcgagcgggccagtaaactgacc > 2:760774‑M1/1‑7 (MQ=255) tCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCaa > 1:1761710/1‑82 (MQ=255) tCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAGAtttt > 1:1801243/1‑90 (MQ=255) tCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAGAtttt > 2:1033347/1‑90 (MQ=255) aGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAGATTTTGt < 2:1248522/90‑1 (MQ=255) aGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAGATTTTGt < 2:363327/90‑1 (MQ=255) gCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTCTCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAGATTTTGTAg < 2:71866/90‑1 (MQ=255) | GGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAGATTTTGTAG > NZ_CP009273/3143966‑3144142 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |