New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 3486555	89 (1.420)	3 (0.050)	3/160	3.9	3.4%	coding (629/1182 nt)	tsgA	MFS transporter TsgA
	?	NZ_CP009273	3486559 =	84 (1.360)					coding (633/1182 nt)	tsgA	MFS transporter TsgA
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCCAAAAACGGATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP009273/3486502‑3486555 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGCCTGAGTATGCCAAAGGCCTGGGCATGAGCCTGA  >  NZ_CP009273/3486559‑3486647                                                                                                                                                 GCCAAAAACGGATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTA‑‑‑‑‑‑‑CTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTT                                                <  2:1610210/90‑1                         GAAAGAAAAGTGGGGGATCGGCGTACTGTTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGCCTGA                               >  2:1660908/1‑90                             GAAAAGTGGGGGATCGGCGTACTGTTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGCCTGAGTAT                           <  1:1660907/90‑1                                                      TCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGCCTGAGTATGCCAAAGGCCTGGGCATGAGCCTGA  >  2:961168/1‑90                                                                                                                                                 GCCAAAAACGGATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP009273/3486502‑3486555 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGCCTGAGTATGCCAAAGGCCTGGGCATGAGCCTGA  >  NZ_CP009273/3486559‑3486647

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.