| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3486555 | 89 (1.420) | 3 (0.050) | 3/160 | 3.9 | 3.4% | coding (629/1182 nt) | tsgA | MFS transporter TsgA |
| ? | NZ_CP009273 | 3486559 = | 84 (1.360) | coding (633/1182 nt) | tsgA | MFS transporter TsgA | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTCGGCTGTGAGTTCCCGGCGCTGGGCAAACATGCGCCAAAAACGGATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGCCTGAGTATGCCAAAGGCCTGGGCATGAGCC > NZ_CP009273/3486467‑3486644 | ttCGGCTGTGAGTTCCCGGCGCTGGGCAAACATGCGCCAAAAACGGATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGttt < 2:1221279/90‑1 (MQ=255) tCGGCTGTGAGTTCCCGGCGCTGGGCAAACATGCGCCAAAAACGGATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTtc < 2:723521/90‑1 (MQ=255) tCGGCTGTGAGTTCCCGGCGCTGGGCAAACATGCGCCAAAAACGGATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTtc > 1:985702/1‑90 (MQ=255) tCGGCTGTGAGTTCCCGGCGCTGGGCAAACATGCGCCAAAAACGGATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTtc > 2:270356/1‑90 (MQ=255) tCGGCTGTGAGTTCCCGGCGCTGGGCAAACATGCGCCAAAAACGGATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTtc > 1:1366930/1‑90 (MQ=255) ggCTGTGAGTTCCCGGCGCTGGGCAAACATGCGCCAAAAACGGATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTtctc < 2:1161129/90‑1 (MQ=255) ggCTGTGAGTTCCCGGCGCTGGGCAAACATGCGCCAAAAACGGATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTtctc < 1:1804371/90‑1 (MQ=255) cTGTGAGTTCCCGGCGCTGGGCAAACATGCGCCAAAAACGGATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTtctctc < 2:985703/90‑1 (MQ=255) gTTCCCGGCGCTGGGCAAACATGCGCCAAAAACGGATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTgc > 2:1545805/1‑90 (MQ=255) gTTCCCGGCGCTGGGCAAACATGCGCCAAAAACGGATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTgc > 2:182288/1‑90 (MQ=255) cGGCGCTGGGCAAACATGCGCCAAAAACGGATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTGCTGTTTCTCTCTGTTGCGGCGt < 2:753390/90‑1 (MQ=255) cGGCGCTGGGCAAACATGCGCCAAAAACGGATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGt < 2:335863/90‑1 (MQ=255) ggCGCTGGGCAAACATGCGCCAAAAACGGATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGtt < 2:1375977/90‑1 (MQ=255) ggCGCTGGGCAAACATGCGCCAAAAACGGATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGtt < 2:1664287/90‑1 (MQ=255) gcgcTGGGCAAACATGCGCCAAAAACGGATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTtg < 2:963708/90‑1 (MQ=255) gcgcTGGGCAAACATGCGCCAAAAACGGATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTtg < 1:513246/90‑1 (MQ=255) cgcTGGGCAAACATTCGCCAAAAACGGATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTtgt > 2:1768878/1‑90 (MQ=255) cgcTGGGCAAACATTCGCCAAAAACGGATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTtgt > 2:891072/1‑90 (MQ=255) tGGGCAAACATGCGCCAAAAACGGATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCt < 2:541128/90‑1 (MQ=255) ggCAAACATGCGCCAAAAACGGATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTAc < 1:1162673/90‑1 (MQ=255) tGCGCCAAAAACGGATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCgg < 2:633478/90‑1 (MQ=255) gcgcCAAAAACGGATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGt < 2:696810/73‑1 (MQ=255) gcgcCAAAAACGGATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGt > 1:696810/1‑73 (MQ=255) gcgcCAAAAACGGATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGt > 1:29141/1‑90 (MQ=255) gcgcCAAAAACGGATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGt > 1:637435/1‑90 (MQ=255) gcCAAAAACGGATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTA‑‑‑‑‑‑‑‑‑‑CTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGtttt < 2:1610210/90‑1 (MQ=255) cAAAAACGGATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGt < 2:1044213/90‑1 (MQ=255) aaaaaCGGATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGtt < 2:1793631/90‑1 (MQ=255) aaaaaCGGATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGtt < 1:1192863/90‑1 (MQ=255) aaaaaCGGATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGtt < 1:838233/90‑1 (MQ=255) aaaaaCGGATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGtt < 2:1061413/90‑1 (MQ=255) aaaaCGGATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTa < 2:953620/90‑1 (MQ=255) aaCGGATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAgg < 2:637435/90‑1 (MQ=255) aaCGGATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAgg < 1:1801744/90‑1 (MQ=255) ggATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGtt < 2:510494/63‑1 (MQ=255) ggATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGtt > 1:510494/1‑63 (MQ=255) ggATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGttt > 1:1848251/1‑90 (MQ=255) gATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGtttt < 1:1207590/90‑1 (MQ=255) gATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGtttt < 2:1782637/90‑1 (MQ=255) ccGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTcc < 2:895505/90‑1 (MQ=255) cGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGt > 1:304896/1‑54 (MQ=255) cGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGt < 2:304896/54‑1 (MQ=255) ggTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTg < 2:1564649/90‑1 (MQ=255) ggTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTg < 1:1198335/90‑1 (MQ=255) ggTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTg > 2:376606/1‑90 (MQ=255) gaaagaaaAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGcc > 2:1665230/1‑90 (MQ=255) gaaagaaaAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGcc > 2:153279/1‑90 (MQ=255) gaaagaaaAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGcc > 2:927575/1‑90 (MQ=255) gaaagaaaAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGcc > 1:1580175/1‑90 (MQ=255) gaaagaaaAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGcc < 1:1608126/90‑1 (MQ=255) gaaagaaaAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGcc > 1:1644974/1‑90 (MQ=255) gaaagaaaAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGcc < 1:1768877/90‑1 (MQ=255) gaaagaaaAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGcc < 1:891071/90‑1 (MQ=255) gaaagaaaAGTGGGGGATCGGCGTACTGT‑‑‑TCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGCCTGa > 2:1660908/1‑90 (MQ=255) gaaagaaaAGTGGGGGATCGGAGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGcc < 2:1275461/90‑1 (MQ=255) aagaaaAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCg > 2:814393/1‑60 (MQ=255) aagaaaAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCg < 1:814392/60‑1 (MQ=255) gaaaAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGCCTGAg > 1:100835/1‑90 (MQ=255) gaaaAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGCCTGAg > 1:732157/1‑90 (MQ=255) gaaaAGTGGGGGATCGGCGTACTGT‑‑‑TCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGCCTGAGTAt < 1:1660907/90‑1 (MQ=255) aaaaGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGCCTGAGt < 1:628272/90‑1 (MQ=255) aaaGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGCCTGAGTa < 2:1644975/90‑1 (MQ=255) aaGTTGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGCCTGAGTAt < 1:530957/90‑1 (MQ=255) aaGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGCCTGAGTAt < 2:1366931/90‑1 (MQ=255) gTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTg < 2:489753/75‑1 (MQ=255) gTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTg > 1:1038520/1‑75 (MQ=255) gTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTg > 1:489753/1‑75 (MQ=255) gTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTg < 2:1038521/75‑1 (MQ=255) tGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGCCTGAGTATGcc > 2:992058/1‑90 (MQ=255) tGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGCCTGAGTATGcc > 2:170668/1‑90 (MQ=255) tGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTAGGTCAGTTAGGTTTTATCTCCTGGGTGCCTGAGTATGcc > 1:1490560/1‑90 (MQ=255) ggggATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGCCTGAGTATGCCaa < 2:444956/90‑1 (MQ=255) ggggATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGCCTGAGTATGCCaa > 1:444956/1‑90 (MQ=255) gggATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGCCTGAGTATGCCaaa < 1:493479/90‑1 (MQ=255) aTCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGCCTGAGTATGCCAAAGGc > 1:565640/1‑90 (MQ=255) tCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGCCTGAGTATGCCAAAGGcc > 1:79759/1‑90 (MQ=255) cGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGCCTGAGTATGCCAAAGGCCt > 2:567024/1‑90 (MQ=255) ggCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGt > 2:1272140/1‑49 (MQ=255) ggCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGt < 1:1272139/49‑1 (MQ=255) ggCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGCCTGAGTAt > 1:1370514/1‑78 (MQ=255) ggCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGCCTGAGTAt < 2:1370515/78‑1 (MQ=255) ggCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGCCTGAGTATGCCAAAGGCCTg < 1:1276194/90‑1 (MQ=255) aCTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGCCTGAGTATGCCAAAGGCCTGGGCAt < 1:866952/90‑1 (MQ=255) aCTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGCCTGAGTATGCCAAAGGCCTGGGCAt < 1:1111012/90‑1 (MQ=255) aCTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGCCTGAGTATGCCAAAGGCCTGGGCAt < 1:170706/90‑1 (MQ=255) gTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGCCTGAGTATGCCAAAGGCCTGGGCATGAg > 2:81811/1‑90 (MQ=255) gTTTCTCTCGGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGCCTGAGTATGCCAAAGGCCTGGGCATGAg > 1:439910/1‑90 (MQ=255) tttCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGCCTGAGTATGCCAAAGGCCTGGGCATGAGc > 2:1421476/1‑90 (MQ=255) tttCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGCCTGAGTATGCCAAAGGCCTGGGCATGAGc > 1:9195/1‑90 (MQ=255) ttCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGcc > 1:1611054/1‑61 (MQ=255) ttCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGcc < 2:1611055/61‑1 (MQ=255) ttCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGCCTGAGTATGCCAAAGGCCTGGGCATGAGcc > 1:1257584/1‑90 (MQ=255) | TTCGGCTGTGAGTTCCCGGCGCTGGGCAAACATGCGCCAAAAACGGATGCTCCGGTAGAGAAAGAAAAGTGGGGGATCGGCGTACTGTTTCTCTCTGTTGCGGCGTTGTGCTACATCCTCGGTCAGTTAGGTTTTATCTCCTGGGTGCCTGAGTATGCCAAAGGCCTGGGCATGAGCC > NZ_CP009273/3486467‑3486644 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |