Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	578920	579167	248	2 [0]	[0] 2	[appY]	[appY]

TAGCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAA  >  NZ_CP009273/578875‑578919                                             | taGCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATaaa  >  1:167430/1‑45 (MQ=255) taGCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATaaa  <  2:167430/45‑1 (MQ=255)                                             | TAGCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAA  >  NZ_CP009273/578875‑578919

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑