Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	578920	579167	248	2 [0]	[0] 2	[appY]	[appY]

GTCAATCATTTGATTTAATTATAAACAGGAGAGTTATCTCGTTCA  >  NZ_CP009273/579168‑579212 |                                             gTCAATCATTTGATTTAATTATAAACAGGAGAGTTATCTCGTTCa  >  1:373827/1‑45 (MQ=255) gTCAATCATTTGATTTAATTATAAACAGGAGAGTTATCTCGTTCa  <  2:373827/45‑1 (MQ=255) |                                             GTCAATCATTTGATTTAATTATAAACAGGAGAGTTATCTCGTTCA  >  NZ_CP009273/579168‑579212

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑