Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1539469	1539508	40	3 [1]	[0] 2	BW25113_RS07710	leucine‑rich repeat domain‑containing protein

TAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTG  >  NZ_CP009273/1539509‑1539598 |                                                                                          tAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAgttggttg  >  1:402220/1‑90 (MQ=255) tAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAgttggttg  >  2:152928/1‑90 (MQ=255) |                                                                                          TAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTG  >  NZ_CP009273/1539509‑1539598

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑