Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1699316	1699327	12	3 [1]	[1] 2	ydgT	transcription modulator YdgT

TAAAATTTCGCAAAATCAGTTCACTCGAAAGTCTGGAAAAACTCTACGACCATCTTAATTACACCCTGACGGACGATCAGGAACTGATCA  >  NZ_CP009273/1699228‑1699317                                                                                        |   taAAATTTCGCAAAATCAGTTCACTCGAAAGTCTGGAAAAACTCTACGACCATCTTAATTACACCCTGACGGACGATCAGGAACTGATCa  <  1:273624/90‑1 (MQ=255)                                         aCTCTACGACCATCTTAATTACACCCTGACGGACGATCAGGAACTGAt    <  1:283116/48‑1 (MQ=255)                                         aCTCTACGACCATCTTAATTACACCCTGACGGACGATCAGGAACTGAt    >  2:283116/1‑48 (MQ=255)                                                                                        |   TAAAATTTCGCAAAATCAGTTCACTCGAAAGTCTGGAAAAACTCTACGACCATCTTAATTACACCCTGACGGACGATCAGGAACTGATCA  >  NZ_CP009273/1699228‑1699317

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑