Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1699316	1699327	12	3 [1]	[1] 2	ydgT	transcription modulator YdgT

ATCGTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCA  >  NZ_CP009273/1699324‑1699417     |                                                                                          aTCGTGCTGCCGATCCCCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGCCCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATg      <  2:100315/90‑1 (MQ=255)     tgctgcCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCa  >  1:135644/1‑90 (MQ=255)     |                                                                                          ATCGTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCA  >  NZ_CP009273/1699324‑1699417

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑