Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1311074	1311084	11	4 [0]	[1] 3	trpA	tryptophan synthase subunit alpha

TCTGGCGCAGCAGGTCGTCATCGGCATTTGGCGGGCAGATGAAGATAGGTGCGACATTATGACGCAACGCGGCCTGGCGGAAGGGCGCGG  >  NZ_CP009273/1310984‑1311073                                                                                          | tCTGGCGCAGCAGGTCGTCATCGGCATTTGGCGGGCAGATGAAGATAGGTGCGACATTATGACGCAACGCGGCCTGGCGGAAGGGCGCgg  <  1:108191/90‑1 (MQ=255) tCTGGCGCAGCAGGTCGTCATCGGCATTTGGCGGGCAGATGAAGATAGGTGCGACATTATGACGCAACGCGGCCTGGCGGAAGGGCGCgg  >  2:67649/1‑90 (MQ=255)                                            gATAGGTGCGACATTATGACGCAACGCGGCCTGGCGGAAGGGCGCgg  <  1:180951/47‑1 (MQ=255)                                            gATAGGTGCGACATTATGACGCAACGCGGCCTGGCGGAAGGGCGCgg  >  2:180951/1‑47 (MQ=255)                                                                                          | TCTGGCGCAGCAGGTCGTCATCGGCATTTGGCGGGCAGATGAAGATAGGTGCGACATTATGACGCAACGCGGCCTGGCGGAAGGGCGCGG  >  NZ_CP009273/1310984‑1311073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑