Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1311074	1311084	11	4 [0]	[1] 3	trpA	tryptophan synthase subunit alpha

CTGGCACATCGGCAACCAGCACCGAATCGACGCCGACTTTTTCGCACTGGGCATAAAACTCATCAATGCCTTTGTTAAACACCAGATTGG  >  NZ_CP009273/1311083‑1311172   |                                                                                        cTGGCACATCGGCAACCAGCACCGAATCGACGCCGACTTTTTCGCACTGGGCATAAAACTCATCAATGCCTTTGTTAAACACCAGATTgg  >  1:158749/1‑90 (MQ=255)   ggCACATCGGCAACCAGCACCGAATCGACGCCGACTTTTTCGCACTGGGCAt                                      >  1:114964/1‑52 (MQ=255)   ggCACATCGGCAACCAGCACCGAATCGACGCCGACTTTTTCGCACTGGGCAt                                      <  2:114964/52‑1 (MQ=255)   |                                                                                        CTGGCACATCGGCAACCAGCACCGAATCGACGCCGACTTTTTCGCACTGGGCATAAAACTCATCAATGCCTTTGTTAAACACCAGATTGG  >  NZ_CP009273/1311083‑1311172

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑