Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1957144	1957162	19	3 [1]	[1] 4	flhe	flagellar protein FlhE

CGCCACGCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGACTCACCGCGATGATTTAGCGTAATTCCTACAC  >  NZ_CP009273/1957054‑1957153                                                                                          |           cGCCACGCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGACTCACCGCGATGATTTAGCGTa            <  1:116640/90‑1 (MQ=255) cGCCACGCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGACTCACCGCGATGATTTAGCGTa            <  2:140989/90‑1 (MQ=255)           ccAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGACTCACCGCGATGATTTAGCGTAATTCCTacac  >  1:99082/1‑90 (MQ=255)                                                                                          |           CGCCACGCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGACTCACCGCGATGATTTAGCGTAATTCCTACAC  >  NZ_CP009273/1957054‑1957153

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑