Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1957144	1957162	19	3 [1]	[1] 4	flhe	flagellar protein FlhE

CTGCCACATCCCCTCCCCGGCGGCTTGCACCAGCAGCGGAAACAATAATATTGCTAATAAGGTTCTCATTATTTGCCGCCAATTGTCGCCGT  >  NZ_CP009273/1957161‑1957252   |                                                                                          ctgccACATCCCCTCCCCGGCGGCTTGCACCAGCAGCGGAAACAATAATATTGCTAATAAGGTTCTCATTATTTGCCGCCAATTGTCGcc    >  2:95555/1‑90 (MQ=255)   gccACATCCCCTCCCCGGCGGCTTGCACCAGCAGCGGAAACAATAATAtt                                          <  1:10374/50‑1 (MQ=255)   gccACATCCCCTCCCCGGCGGCTTGCACCAGCAGCGGAAACAATAATAtt                                          >  2:10374/1‑50 (MQ=255)   gccACATCCCCTCCCCGGCGGCTTGCACCAGCAGCGGAAACAATAATATTGCTAATAAGGTTCTCATTATTTGCCGCCAATTGTCGCCGt  >  1:233537/1‑90 (MQ=255)   |                                                                                          CTGCCACATCCCCTCCCCGGCGGCTTGCACCAGCAGCGGAAACAATAATATTGCTAATAAGGTTCTCATTATTTGCCGCCAATTGTCGCCGT  >  NZ_CP009273/1957161‑1957252

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑