Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1229260	1229274	15	2 [1]	[0] 3	nhaB	Na(+)/H(+) antiporter NhaB

GTCAATGATGTTGCCAGAATAATGACTGACAAACCAATCAAGCCAACTTCCGCCAGATGCAACGCCAGCGCAGTCACCAGCCAGACGCCAATAATCGC  >  NZ_CP009273/1229170‑1229267                                                                                          |         gTCAATGATGTTGCCAGAATAATGACTGACAAACCAATCAAGCCAACTTCCGCCAGATGCAACGCCAGCGCAGTCACCAGCCAGACGCCa          >  1:517658/1‑90 (MQ=255)         tgTTGCCAGAATAATGACTGACAAACCAATCAAGCCAACTTCCGCCAGATGCAACGCCAGCGCAGTCACCAGCCAGACGCCAATAATCGc  <  2:501452/90‑1 (MQ=255)                                                                                          |         GTCAATGATGTTGCCAGAATAATGACTGACAAACCAATCAAGCCAACTTCCGCCAGATGCAACGCCAGCGCAGTCACCAGCCAGACGCCAATAATCGC  >  NZ_CP009273/1229170‑1229267

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑