Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1067189	1067243	55	2 [1]	[1] 2	[rutD]–[rutC]	[rutD],[rutC]

CTGATACTCCTGCTCCAGCACCGCCAGTTGCGGTAACCAGTAACTGCCGCTACCCCCAAGACCCGAAATCAACACCACTACGGGCGCATCAGCATAAG  >  NZ_CP009273/1067099‑1067196                                                                                          |         cTGATACTCCTGCTCCAGCACCGCCAGTTGCGGTAACCAGTAACTGCCGCTACCCCCAAGACCCGAAATCAACACCACTACGGGCGCATc          <  1:21712/90‑1 (MQ=255)         ccTGCTCCAGCACCGCCAGTTGCGGTAACCAGTAACTGCCGCTACCCCCAAGACCCGAAATCAACACCACTACGGGCGCATCAGCATAAg  >  2:135233/1‑90 (MQ=255)                                                                                          |         CTGATACTCCTGCTCCAGCACCGCCAGTTGCGGTAACCAGTAACTGCCGCTACCCCCAAGACCCGAAATCAACACCACTACGGGCGCATCAGCATAAG  >  NZ_CP009273/1067099‑1067196

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑