Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1539028	1539038	11	3 [0]	[1] 5	BW25113_RS07710	leucine‑rich repeat domain‑containing protein

AAGTGCTGGGGAAAACAAATTAAATAACATGAGCTGCATAGTAGGGCAATTGTTCTTCCCAGAAACATTTAAAAAATTTAAGTTTTGCTC  >  NZ_CP009273/1538938‑1539027                                                                                          | aaGTGCTGGGGAAAACAAATTAAATAACATGAGCTGCATAGTAGGGCAATTGTTCTTCCCAGAAACATTTAAAAAATTTAAGTTTTGctc  <  1:83004/90‑1 (MQ=255) aaGTGCTGGGGAAAACAAATTAAATAACATGAGCTGCATAGTAGGGCAATTGTTCTTCCCAGAAACATTTAAAAAATTTAAGTTTTGctc  <  2:134194/90‑1 (MQ=255) aaGTGCTGGGGAAAACAAATTAAATAACATGAGCTGCATAGTAGGGCAATTGTTCTTCCCAGAAACATTTAAAAAATTTAAGTTTTGctc  <  2:80765/90‑1 (MQ=255)                                                                                          | AAGTGCTGGGGAAAACAAATTAAATAACATGAGCTGCATAGTAGGGCAATTGTTCTTCCCAGAAACATTTAAAAAATTTAAGTTTTGCTC  >  NZ_CP009273/1538938‑1539027

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑