Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2016022	2016023	2	2 [0]	[0] 2	fliP	flagellar type III secretion system pore protein FliP

ATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCTTTAAACTGATG  >  NZ_CP009273/2015932‑2016021                                                                                          | aTTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCTTTAAACTGATg  <  1:36673/90‑1 (MQ=255) aTTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCTTTAAACTGATg  <  1:85486/90‑1 (MQ=255)                                                                                          | ATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCTTTAAACTGATG  >  NZ_CP009273/2015932‑2016021

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑