Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2016022	2016023	2	2 [0]	[0] 2	fliP	flagellar type III secretion system pore protein FliP

GTTTGTACTGGTGGATGGCTGGCAATTGCTGGTCGGTTCGCTGGCGC  >  NZ_CP009273/2016024‑2016070 |                                               gTTTGTACTGGTGGATGGCTGGCAATTGCTGGTCGGTTCGCTGgcgc  >  1:250395/1‑47 (MQ=255) gTTTGTACTGGTGGATGGCTGGCAATTGCTGGTCGGTTCGCTGgcgc  <  2:250395/47‑1 (MQ=255) |                                               GTTTGTACTGGTGGATGGCTGGCAATTGCTGGTCGGTTCGCTGGCGC  >  NZ_CP009273/2016024‑2016070

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑