| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 2282398 = | NA (NA) | 9 (0.720) | 6/166 | 0.6 | 81.8% | pseudogene (3/2532 nt) | yejO | autotransporter YejO |
| ? | NZ_CP009273 | = 3630786 | 2 (0.160) | intergenic (‑16/‑216) | yhiN/pitA | NAD(P)/FAD‑dependent oxidoreductase/inorganic phosphate transporter PitA | |||||
CATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/2282486‑2282398‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAAGAGGAGCGCAACGTGGAAAGGTTTGATGCCATTATTATAGGCGCTGGTGCGGCGGGTATGTTCTGTTCTGCGCTGGC < NZ_CP009273/3630786‑3630706 CATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCC < 1:261647/90‑1 ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT > 1:45635/1‑90 TTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAA < 1:944/90‑1 GACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGAGGAGCGCAACGTGGAAAGGTTTGATGCCATTATTATAGG > 2:78678/1‑90 AGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGAGGAGCGCAACGTGGAAAGGTTTGATGCCA < 1:250890/66‑1 AGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGAGGAGCGCAACGTGGAAAGGTTTGATGCCA > 2:250890/1‑66 AGAATTTCCCCGCTTATTCGCACCTTCCCTAAGAGGAGCGCAACGTGGAAAGGTTTGATGCCATTATTATAGGCGCTGGTGCGGCGGGTA < 2:152267/90‑1 TTCCCCGCTTATTCGCACCTTCCCTAAGAGGAGCGCAACGTGGAAAGGTTTGATGCCATTATTATAGGCGCTGGTGCGGCGGGTATGTTC < 1:316529/90‑1 GCACCTTCCCTAAGAGGAGCGCAACGTGGAAAGGTTTGATGCCATTATTATAGGCGCTGGTGCGGCGGGTATGTTCTGTTCTGCGCTGGC < 2:177574/90‑1 CATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/2282486‑2282398‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAAGAGGAGCGCAACGTGGAAAGGTTTGATGCCATTATTATAGGCGCTGGTGCGGCGGGTATGTTCTGTTCTGCGCTGGC < NZ_CP009273/3630786‑3630706 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |