New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	2282398 =	NA (NA)	9 (0.720)	6/166	0.6	81.8%	pseudogene (3/2532 nt)	yejO	autotransporter YejO
	?	NZ_CP009273	= 3630786	2 (0.160)					intergenic (‑16/‑216)	yhiN/pitA	NAD(P)/FAD‑dependent oxidoreductase/inorganic phosphate transporter PitA

GCCAGCGCAGAACAGAACATACCCGCCGCACCAGCGCCTATAATAATGGCATCAAACCTTTCCACGTTGCGCTCCTCTTAGAAAAAACGGGCGTGAATTGTAAAGATTCCTCAGTGGTCGCACCAGCATCAATATTACTAAAAGGAAGTATTTGCCTGAATTATATAAGA  >  NZ_CP009273/3630706‑3630875                                                                                 |                                                                                          gCCAGCGCAGAACAGAACATACCCGCCGCACCAGCGCCTATAATAATGGCATCAAACCTTTCCACGTTGCGCTCCTCTTAGggaaggtgc                                                                                  <  2:177574‑M2/90‑10 (MQ=255)               gaacaTACCCGCCGCACCAGCGCCTATAATAATGGCATCAAACCTTTCCACGTTGCGCTCCTCTTAGggaaggtgcgaataagcggggaa                                                                    <  1:316529‑M2/90‑24 (MQ=255)                    tACCCGCCGCACCAGCGCCTATAATAATGGCATCAAACCTTTCCACGTTGCGCTCCTCTTAGggaaggtgcgaataagcggggaaattct                                                               <  2:152267‑M2/90‑29 (MQ=255)                                     ccTATAATAATGGCATCAAACCTTTCCACGTTGCGCTCCTCTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtc                                              >  2:78678‑M2/1‑45 (MQ=255)                                               tGGCATCAAACCTTTCCACGTTGCGCTCCTCTTAGggaaggtgcgaataagcggggaaattcttct                                                            <  1:250890‑M2/66‑32 (MQ=255)                                               tGGCATCAAACCTTTCCACGTTGCGCTCCTCTTAGggaaggtgcgaataagcggggaaattcttct                                                            >  2:250890‑M2/1‑35 (MQ=255)                                                 gCATCAAACCTTTCCACGTTGCGCTCCTCTTAGAAAAAACGGGCGTGAATTGTAAAGATTCCTCAGTGGTCGCACCAGCATCAATATTAc                                  >  1:184315/1‑90 (MQ=255)                                                                   ttGCGCTCCTCTTAGAAAAAACGGGCGTGAATTGTAAAGATTCCTCAGTGGCCGCACCAGCATCAATATTACTAAAAGGAAGTATTTGcc                <  2:184315/90‑1 (MQ=255)                                                                              ttAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaa     <  1:944‑M2/90‑87 (MQ=255)                                                                                aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat   >  1:45635‑M2/1‑2 (MQ=255)                                                                                 gggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatg  <  1:261647‑M2/90‑90 (MQ=255)                                                                                 |                                                                                          GCCAGCGCAGAACAGAACATACCCGCCGCACCAGCGCCTATAATAATGGCATCAAACCTTTCCACGTTGCGCTCCTCTTAGAAAAAACGGGCGTGAATTGTAAAGATTCCTCAGTGGTCGCACCAGCATCAATATTACTAAAAGGAAGTATTTGCCTGAATTATATAAGA  >  NZ_CP009273/3630706‑3630875

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.