Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2792415	2792428	14	2 [1]	[0] 4	stpA/alaE	DNA‑binding protein StpA/L‑alanine exporter AlaE

GCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAGGAGCAT  >  NZ_CP009273/2792429‑2792518 |                                                                                          gCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCAtc                                       >  1:93457/1‑53 (MQ=255) gCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCAtc                                       <  2:93457/53‑1 (MQ=255) gCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAGGAGCAt  >  1:200825/1‑90 (MQ=255) gCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAGGAGCAt  >  2:193906/1‑90 (MQ=255) |                                                                                          GCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAGGAGCAT  >  NZ_CP009273/2792429‑2792518

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑