| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 2282399 = | NA (NA) | 29 (2.260) | 18/166 | 0.0 | 100% | pseudogene (2/2532 nt) | yejO | autotransporter YejO |
| ? | NZ_CP009273 | = 3628271 | 0 (0.000) | coding (71/1053 nt) | yhiM | DUF2776 domain‑containing protein | |||||
CATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/2282486‑2282399‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCTAACGCGATACAAATTAAGCCCATAATCAAAGGGATTAATTTGAAAAGCCACCCGATATATATGTTCACTTTAAACTCCTCAGGT < NZ_CP009273/3628271‑3628185 CATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCC < 2:119178/90‑1CATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCC < 1:320867/90‑1CATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCC < 1:10174/90‑1CATTTACAGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCC < 1:137829/90‑1 ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT < 1:37690/90‑1 ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT < 1:361237/90‑1 TACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAC < 1:219397/90‑1 CGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGC < 2:277654/90‑1 GAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGCGATAC < 2:193506/90‑1 TCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGCGATACAAATTAA < 2:50895/90‑1 CTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGCGATACAAATTAAGCCC < 1:214301/90‑1 AACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGCGATACAAATTAAGCCCATAA > 2:43073/1‑90 GAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGCGATACAAATTAAGCCCATAATCAAA < 2:150759/90‑1 GAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGCGATACAAATTAAGCCCATAATCAAA < 1:193012/90‑1 GAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGCGATACAAATTAAGCCCATAA < 2:162697/68‑1 GAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGCGATACAAATTAAGCCCATAA > 1:162697/1‑68 CAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGCGATACAAATTAAGCCCATAATCAAAGGGATTAATTTGAAAAGCCAC < 1:222276/90‑1 AGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGCGATACAAATTAAGCCCATAATCAAAGGGATTAATTTGAAAAGCCACC > 2:266694/1‑90 GCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGCGATACAAATTAAGCCCATAATCAAAGGGATTAATTTGAAAAGCCACCC > 2:198155/1‑90 GCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGCGATACAAATTAAGCCCATAATCAAAGGGATTAATTTGAAAAGCCACCC < 1:358920/90‑1 GCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGCGATACAAATTAAGCCCATAATCAAAGGGATTAATTTGAAAAGCCACCC < 1:266694/90‑1 GAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGCGATACAAATTAAGCCCATAATCAAAGGGATTAATTTGAAAAGCCACCCGATAT < 1:160168/90‑1 AAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGCGATACAAATTAAGCCCATAATCAAAGGGATTAATTTGAAAAGCCACCCGATATA < 1:179322/90‑1 TTCCCCGCTTATTCGCACCTTCCCTAACGCGATACAAATTAAGCCCATAATCAAAGGGATTAATTTGAAAAGCCACCCGATATATATGTT < 2:242254/90‑1 TTATTCGCACCTTCCCTAACGCGATACAAATTAAGCCCATAATCAAAGGGATTAATTTGAAAAGCCACCCGATATATATGTTCACTTTAA < 1:319723/90‑1 TTATTCGCACCTTCCCTAACGCGATACAAATTAAGCCCATAATCAAAGGGATTAATTTGAAAAGCCACCCGATATATATGTTCACTTTAA < 2:42440/90‑1 GCACCTTCCCTAACGCGATACAAATTAAGCCCATAATCAAAGGGATTAATTTGAAAAGCCACCCGATATATATGTTCACTTTAAACTCCT < 1:281885/90‑1 GCACCTTCCCTAACGCGATACAAATTAAGCCCATAATCAAAGGGATTAATTTGAAAAGCCACCCGATATATATGTTCACTTTAAACTCCT < 2:336240/90‑1 TTCCCTAACGCGATACAAATTAAGCCCATAATCAAAGGGATTAATTTGAAAAGCCACCCGATATATATGTTCACTTTAAACTCCTCAGGT < 1:133805/90‑1 CATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/2282486‑2282399‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCTAACGCGATACAAATTAAGCCCATAATCAAAGGGATTAATTTGAAAAGCCACCCGATATATATGTTCACTTTAAACTCCTCAGGT < NZ_CP009273/3628271‑3628185 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |