| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 2282399 = | NA (NA) | 29 (2.260) | 18/166 | 0.0 | 100% | pseudogene (2/2532 nt) | yejO | autotransporter YejO |
| ? | NZ_CP009273 | = 3628271 | 0 (0.000) | coding (71/1053 nt) | yhiM | DUF2776 domain‑containing protein | |||||
ACCTGAGGAGTTTAAAGTGAACATATATATCGGGTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAAGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGCATTA > NZ_CP009273/3628185‑3628359 | aCCTGAGGAGTTTAAAGTGAACATATATATCGGGTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGgaa < 1:133805‑M2/90‑4 (MQ=255) aggagTTTAAAGTGAACATATATATCGGGTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGgaaggtgc < 2:336240‑M2/90‑9 (MQ=255) aggagTTTAAAGTGAACATATATATCGGGTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGgaaggtgc < 1:281885‑M2/90‑9 (MQ=255) ttAAAGTGAACATATATATCGGGTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGgaaggtgcgaataa < 2:42440‑M2/90‑15 (MQ=255) ttAAAGTGAACATATATATCGGGTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGgaaggtgcgaataa < 1:319723‑M2/90‑15 (MQ=255) aaCATATATATCGGGTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGgaaggtgcgaataagcggggaa < 2:242254‑M2/90‑23 (MQ=255) tatatCGGGTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGgaaggtgcgaataagcggggaaattctt < 1:179322‑M2/90‑29 (MQ=255) atatCGGGTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGgaaggtgcgaataagcggggaaattcttc < 1:160168‑M2/90‑30 (MQ=255) gggTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGgaaggtgcgaataagcggggaaattcttctcggc < 1:358920‑M2/90‑35 (MQ=255) gggTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGgaaggtgcgaataagcggggaaattcttctcggc > 2:198155‑M2/1‑56 (MQ=255) gggTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGgaaggtgcgaataagcggggaaattcttctcggc < 1:266694‑M2/90‑35 (MQ=255) ggTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGgaaggtgcgaataagcggggaaattcttctcggct > 2:266694‑M2/1‑55 (MQ=255) gTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGgaaggtgcgaataagcggggaaattcttctcggctg < 1:222276‑M2/90‑37 (MQ=255) tttGATTATGGGCTTAATTTGTATCGCGTTAGGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttc < 1:193012‑M2/90‑58 (MQ=255) tttGATTATGGGCTTAATTTGTATCGCGTTAGGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttc < 2:150759‑M2/90‑58 (MQ=255) ttATGGGCTTAATTTGTATCGCGTTAGGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtt > 2:43073‑M2/1‑28 (MQ=255) ttATGGGCTTAATTTGTATCGCGTTAGGgaaggtgcgaataagcggggaaattcttctcggctgactc < 2:162697‑M2/68‑41 (MQ=255) ttATGGGCTTAATTTGTATCGCGTTAGGgaaggtgcgaataagcggggaaattcttctcggctgactc > 1:162697‑M2/1‑28 (MQ=255) gggCTTAATTTGTATCGCGTTAGGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgag < 1:214301‑M2/90‑67 (MQ=255) ttAATTTGTATCGCGTTAGGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccga < 2:50895‑M2/90‑71 (MQ=255) gTATCGCGTTAGGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttc < 2:193506‑M2/90‑78 (MQ=255) gcgTTAGGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccg < 2:277654‑M2/90‑83 (MQ=255) gTTAGGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgta < 1:219397‑M2/90‑85 (MQ=255) aGGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat < 1:37690‑M2/90‑88 (MQ=255) aGGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat < 1:361237‑M2/90‑88 (MQ=255) gggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcctgtaaatg < 1:137829‑M2/90‑89 (MQ=255) gggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatg < 2:119178‑M2/90‑89 (MQ=255) gggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatg < 1:10174‑M2/90‑89 (MQ=255) gggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatg < 1:320867‑M2/90‑89 (MQ=255) | ACCTGAGGAGTTTAAAGTGAACATATATATCGGGTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAAGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGCATTA > NZ_CP009273/3628185‑3628359 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |