| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NZ_CP009273 | 1,613,631 | Δ3 bp | coding (255‑257/435 nt) | marR → | multiple antibiotic resistance transcriptional regulator MarR |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 1613631 | 1613633 | 3 | 25 [0] | [0] 25 | marR | multiple antibiotic resistance transcriptional regulator MarR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 1613630 | 0 (0.000) | 25 (1.060) | 18/164 | 0.2 | 100% | coding (254/435 nt) | marR | multiple antibiotic resistance transcriptional regulator MarR |
| ? | NZ_CP009273 | 1613634 = | 0 (0.000) | coding (258/435 nt) | marR | multiple antibiotic resistance transcriptional regulator MarR | |||||
CGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAGT > NZ_CP009273/1613546‑1613720 | ctccggttgaactgaaaaaggtattgtcggtcgacctgggagcactgacccgtatgctggatcgcctggtctgtaaaggctgggtggaGt > 2:251771‑M2/89‑90 (MQ=255) ccgggtgaactgaaaaaggtattgtcggtcgacctgggagcactgacccgtatgctggatcgcctggtctgtaaaggctgggtggaGTTg > 1:611378‑M2/87‑90 (MQ=255) ttgaactgaaaaaggtattgtcggtcgacctgggagcactgacccgtatgctggatcgcctggtctgtaaaggctgggtggaGTTGCCGa < 1:482444‑M2/8‑1 (MQ=255) aactgaaaaaggtattgtcggtcgacctgggagcactgacccgtatgctggatcgcctggtctgtaaaggctgggtggaGTTGCCGAAcc > 2:177580‑M2/80‑90 (MQ=255) gtcgacctgggagcactgacccgtatgctggatcgcctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACa < 2:400019‑M2/20‑1 (MQ=255) gtcgacctgggagcactgacccgtatgctggatcgcctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACa > 1:400019‑M2/60‑79 (MQ=255) gtcgacctgggagcactgacccgtatgctggatcgcctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTa < 1:528022‑M2/31‑1 (MQ=255) cgacctgggagcactgacccgtatgctggatcgcctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACt < 1:291575‑M2/33‑1 (MQ=255) ctgggagcactgacccgtatgctggatcgcctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTa < 2:198499‑M2/37‑1 (MQ=255) tgggagcactgacccgtatgctggatcgcctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTaa < 1:192942‑M2/38‑1 (MQ=255) tgggagcactgacccgtatgctggatcgcctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTaa < 1:177580‑M2/38‑1 (MQ=255) actgacccgtatgctggatcgcctggtctgtaaaggctgggtggaGTTGCCGa > 1:262729‑M2/46‑53 (MQ=255) actgacccgtatgctggatcgcctggtctgtaaaggctgggtggaGTTGCCGa < 2:262729‑M2/8‑1 (MQ=255) actgacccgtatgctggatcgcctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTac > 1:532198‑M2/46‑90 (MQ=255) actgacccgtatgctggatcgcctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTac > 2:227355‑M2/46‑90 (MQ=255) gatcgcctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCa < 1:560815‑M2/61‑1 (MQ=255) gcctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAatat > 2:227617‑M2/26‑90 (MQ=255) gcctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAatat > 2:461564‑M2/26‑90 (MQ=255) gcctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAatat > 2:680085‑M2/26‑90 (MQ=255) taaaggctgggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATg > 2:68244‑M2/16‑90 (MQ=255) aaggctgggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGcc < 2:271559‑M2/77‑1 (MQ=255) tgggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCCCCGGCGGCGCGGCAATATGTGAACAATGCCATCaa < 1:648341‑M2/82‑1 (MQ=255) ggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCa > 1:497532‑M2/7‑67 (MQ=255) ggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCa < 2:497532‑M2/61‑1 (MQ=255) ggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAGt < 2:611378‑M2/87‑1 (MQ=255) | CGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAGT > NZ_CP009273/1613546‑1613720 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |