| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NZ_CP009273 | 1,613,631 | Δ3 bp | coding (255‑257/435 nt) | marR → | multiple antibiotic resistance transcriptional regulator MarR |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 1613631 | 1613633 | 3 | 25 [0] | [0] 25 | marR | multiple antibiotic resistance transcriptional regulator MarR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 1613630 | 0 (0.000) | 25 (1.060) | 18/164 | 0.2 | 100% | coding (254/435 nt) | marR | multiple antibiotic resistance transcriptional regulator MarR |
| ? | NZ_CP009273 | 1613634 = | 0 (0.000) | coding (258/435 nt) | marR | multiple antibiotic resistance transcriptional regulator MarR | |||||
CTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATT > NZ_CP009273/1613543‑1613717 | cTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAgt > 2:251771‑M1/1‑88 (MQ=255) ccGGGTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAgttg > 1:611378‑M1/1‑86 (MQ=255) ttGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAgttgccga < 1:482444‑M1/90‑9 (MQ=255) aaCTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAgttgccgaacc > 2:177580‑M1/1‑79 (MQ=255) gtcgACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcggcgta < 1:528022‑M1/90‑32 (MQ=255) gtcgACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgaca < 2:400019‑M1/79‑21 (MQ=255) gtcgACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgaca > 1:400019‑M1/1‑59 (MQ=255) cgACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcggcgtact < 1:291575‑M1/90‑34 (MQ=255) cTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcggcgtactggta < 2:198499‑M1/90‑38 (MQ=255) tGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcggcgtactggtaa < 1:192942‑M1/90‑39 (MQ=255) tGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcggcgtactggtaa < 1:177580‑M1/90‑39 (MQ=255) aCTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcggcgtactggtaaaacttac > 1:532198‑M1/1‑45 (MQ=255) aCTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcggcgtactggtaaaacttac > 2:227355‑M1/1‑45 (MQ=255) aCTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAgttgccga > 1:262729‑M1/1‑45 (MQ=255) aCTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAgttgccga < 2:262729‑M1/53‑9 (MQ=255) gATCGCCTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcggcgtactggtaaaacttaccaccggcggcgcggca < 1:560815‑M1/90‑62 (MQ=255) gCCTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcggcgtactggtaaaacttaccaccggcggcgcggcaatat > 2:227617‑M1/1‑25 (MQ=255) gCCTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcggcgtactggtaaaacttaccaccggcggcgcggcaatat > 2:461564‑M1/1‑25 (MQ=255) gCCTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcggcgtactggtaaaacttaccaccggcggcgcggcaatat > 2:680085‑M1/1‑25 (MQ=255) tAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcggcgtactggtaaaacttaccaccggcggcgcggcaatatgtgaacaatg > 2:68244‑M1/1‑15 (MQ=255) aaGGCTGGGTGGAgttgccgaacccgaatgacaagcgcggcgtactggtaaaacttaccaccggcggcgcggcaatatgtgaacaatgcc < 2:271559‑M1/90‑78 (MQ=255) tGGGTGGAgttgccgaacccgaatgacaagcgcggcgtactggtaaaacttacccccggcggcgcggcaatatgtgaacaatgccatcaa < 1:648341‑M1/90‑83 (MQ=255) ggTGGAgttgccgaacccgaatgacaagcgcggcgtactggtaaaacttaccaccggcggcgcggca > 1:497532‑M1/1‑6 (MQ=255) ggTGGAgttgccgaacccgaatgacaagcgcggcgtactggtaaaacttaccaccggcggcgcggca < 2:497532‑M1/67‑62 (MQ=255) ggAgttgccgaacccgaatgacaagcgcggcgtactggtaaaacttaccaccggcggcgcggcaatatgtgaacaatgccatcaattagt < 2:611378‑M1/90‑88 (MQ=255) | CTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATT > NZ_CP009273/1613543‑1613717 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |