| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NZ_CP009273 | 1,613,631 | Δ3 bp | coding (255‑257/435 nt) | marR → | multiple antibiotic resistance transcriptional regulator MarR |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 1613631 | 1613633 | 3 | 12 [0] | [0] 12 | marR | multiple antibiotic resistance transcriptional regulator MarR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 1613630 | 0 (0.000) | 12 (0.570) | 11/166 | 0.5 | 100% | coding (254/435 nt) | marR | multiple antibiotic resistance transcriptional regulator MarR |
| ? | NZ_CP009273 | 1613634 = | 0 (0.000) | coding (258/435 nt) | marR | multiple antibiotic resistance transcriptional regulator MarR | |||||
GGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCA > NZ_CP009273/1613547‑1613714 | ggTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAgttgcc > 2:329639‑M1/1‑84 (MQ=255) tATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagc > 2:358732‑M1/1‑67 (MQ=255) gtcggtcgACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcgg < 1:322082‑M1/90‑28 (MQ=255) aCTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcggcgtactggtaaaacttac > 2:478527‑M1/1‑45 (MQ=255) gACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcggcgta > 1:116704‑M1/1‑42 (MQ=255) gACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcggcgta < 2:116704‑M1/73‑32 (MQ=255) gCCTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcggcgtactggtaaaacttaccaccggcggcgcggcaatat > 2:202936‑M1/1‑25 (MQ=255) gTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcggcgtactggtaaaacttaccaccggcggcgcggcaatatgtgaacaat > 2:366544‑M1/1‑16 (MQ=255) gTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcggcgtactggtaaaacttaccaccggcggcgcggcaatatgtgaacaat > 2:604157‑M1/1‑16 (MQ=255) ggCTGGGTGGAgttgccgaacccgaatgacaagcgcggcgtactggtaaaacttaccaccggcggcgcggcaatatgtgaacaatgccat > 2:552249‑M1/1‑11 (MQ=255) tGGGTGGAgttgccgaacccgaatgacaagcgcggcgtactggtaaaacttaccaccggcggcgcggcaatatgtgaacaatgccatcaa > 1:398443‑M1/1‑8 (MQ=255) ggTGGAgttgccgaacccgaatgacaagcgcggcgtactggtaaaacttaccaccggcggcgcggcaatatgtgaacaatgccatcaatt > 1:155186‑M1/1‑6 (MQ=255) | GGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCA > NZ_CP009273/1613547‑1613714 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |