| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NZ_CP009273 | 1,613,631 | Δ3 bp | coding (255‑257/435 nt) | marR → | multiple antibiotic resistance transcriptional regulator MarR |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 1613631 | 1613633 | 3 | 12 [0] | [0] 12 | marR | multiple antibiotic resistance transcriptional regulator MarR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 1613630 | 0 (0.000) | 12 (0.570) | 11/166 | 0.5 | 100% | coding (254/435 nt) | marR | multiple antibiotic resistance transcriptional regulator MarR |
| ? | NZ_CP009273 | 1613634 = | 0 (0.000) | coding (258/435 nt) | marR | multiple antibiotic resistance transcriptional regulator MarR | |||||
TGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATT > NZ_CP009273/1613550‑1613717 | ggttgaactgaaaaaggtattgtcggtcgacctgggagcactgacccgtatgctggatcgcctggtctgtaaaggctgggtggaGTTGcc > 2:329639‑M2/85‑90 (MQ=255) tattgtcggtcgacctgggagcactgacccgtatgctggatcgcctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACAAgc > 2:358732‑M2/68‑90 (MQ=255) gtcggtcgacctgggagcactgacccgtatgctggatcgcctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACAAGCgcgg < 1:322082‑M2/27‑1 (MQ=255) actgacccgtatgctggatcgcctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTac > 2:478527‑M2/46‑90 (MQ=255) gacccgtatgctggatcgcctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTa > 1:116704‑M2/43‑73 (MQ=255) gacccgtatgctggatcgcctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTa < 2:116704‑M2/31‑1 (MQ=255) gcctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAatat > 2:202936‑M2/26‑90 (MQ=255) gtaaaggctgggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAAt > 2:366544‑M2/17‑90 (MQ=255) gtaaaggctgggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAAt > 2:604157‑M2/17‑90 (MQ=255) ggctgggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCAt > 2:552249‑M2/12‑90 (MQ=255) tgggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCaa > 1:398443‑M2/9‑90 (MQ=255) ggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAAtt > 1:155186‑M2/7‑90 (MQ=255) | TGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATT > NZ_CP009273/1613550‑1613717 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |