New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 508794	28 (1.010)	3 (0.120)	3/150	2.1	10.4%	coding (763/1293 nt)	ybaT	APC family permease
	?	NZ_CP009273	= 508809	27 (1.100)					coding (778/1293 nt)	ybaT	APC family permease
Rejected: Frequency below/above cutoff threshold.

GGTCATTATGCCACGGGCGTTTCTGGTGGCGATTGGCGTTACCACGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP009273/508700‑508794 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtatcggcatATTTTTCTAACTCTAATGCCGATACATCGCTAAGCAAAACCAGTGCCAGCGAGATATAAAGCAA  <  NZ_CP009273/508809‑508746                                                                                                                                                                 GGTCATTATGCCACGGGCGTTTCTGGTGGCGATTGGCGTTACCACGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATC                                                                       >  1:359709/1‑90 GGTCATTATGCCACGGGCGTTTCTGGTGGCGATTGGCGTTACCACGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATC                                                                       <  2:359709/90‑1   TCATTATGCCACGGGCGTTTCTGGTGGCGATTGGCGTTACCACGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGG                                                                     >  2:415321/1‑90             ACGGGCGTTTCTGGTGGCGATTGGCGTTACCACGTTGCTTTATATCTCGCTGGCTCTGGTTTTGCTTAGCGATGTATC                                                                       <  1:134205/78‑1             ACGGGCGCTTCTGGTGGCGATTGGCGTTACCACGTTGCTTTATATCTCGCTGGCTCTGGTTTTGCTTAGCGATGTATC                                                                       >  2:134205/1‑78                          GTGGCGATTGGCGTTACCACGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATC                                                                       <  1:366010/65‑1                          GTGGCGATTGGCGTTACCACGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATC                                                                       >  2:366010/1‑65                                    GCGTTACCACGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATATTTTTCTAACTCTAATGCCGATACATCGC                                    <  1:172145/90‑1                                                 GCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATATTTTTCTAACTCTAATGCCGATACATCGCTAAGCAAAACCAG                       >  2:199082/1‑90                                                                      GGTTTTGCTTAGCGATGTATCGGCATATTTTTCTAACTCTAATGCCGATACATCGCTAAGCAAAACCAGTGCCAGCGAGATATAAAGCAA  >  1:382499/1‑90                                                                                                                                                                 GGTCATTATGCCACGGGCGTTTCTGGTGGCGATTGGCGTTACCACGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP009273/508700‑508794 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtatcggcatATTTTTCTAACTCTAATGCCGATACATCGCTAAGCAAAACCAGTGCCAGCGAGATATAAAGCAA  <  NZ_CP009273/508809‑508746

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.