| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 508794 | 28 (1.010) | 3 (0.120) | 3/150 | 2.1 | 10.4% | coding (763/1293 nt) | ybaT | APC family permease |
| ? | NZ_CP009273 | = 508809 | 27 (1.100) | coding (778/1293 nt) | ybaT | APC family permease | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CACGGGCGTTTCTGGTGGCGATTGGCGTTACCACGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCATGTGGGTTATGTGAT > NZ_CP009273/508711‑508870 | cACGGGCGTTTCTGGTGGCGATTGGCGTTACCACGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTaga > 2:37655/1‑88 (MQ=255)cACGGGCGTTTCTGGTGGCGATTGGCGTTACCACGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTaga < 1:37655/88‑1 (MQ=255) aCGGGCGTTTCTGGTGGCGCTTGGCGTTACCACGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGtt > 2:32364/1‑90 (MQ=255) aCGGGCGTTTCTGGTGGCGATTGGCGTTACCACGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGtt > 2:661645/1‑90 (MQ=255) gggCGTTTCTGGTGGCGATTGGCGTTACCACGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAg < 1:641598/90‑1 (MQ=255) ggCGTTTCTGGTGGCGATTGGTGTTACCACGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGa > 1:390021/1‑90 (MQ=255) ttCTGGTGGCGATTGGCGTTACCACGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAat < 1:169468/90‑1 (MQ=255) aTTGGCGTTACCACGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATAcc < 2:285492/90‑1 (MQ=255) aTTGGCGTTACCACGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATAcc < 1:415321/90‑1 (MQ=255) gCGTTACCACGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATatttttctaactctaatgccgatacatcgc < 1:172145‑M1/90‑31 (MQ=255) cGTTACCACGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGt < 2:137049/90‑1 (MQ=255) ttGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATatgccgatacatcgctaagcaaaacc > 1:382499‑M2/1‑64 (MQ=255) gCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATatttttctaactctaatgccgatacatcgctaagcaaaaccag > 2:199082‑M1/1‑47 (MQ=255) ttATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTtc > 1:149560/1‑90 (MQ=255) ttATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTtc > 2:406322/1‑90 (MQ=255) tatCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTcc > 1:615493/1‑90 (MQ=255) tctcGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCgc < 1:406322/90‑1 (MQ=255) tcccGCTGGCACTGGTTTTGTTTAGCGGTATACCGCATTTAGACTTAGAAAAATATGCCGTTACCGCCGTAGCGCAGGCTGCTTCTCCgc < 1:566624/87‑1 (MQ=255) tcGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAg < 2:629535/75‑1 (MQ=255) tcGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAg > 1:629535/1‑75 (MQ=255) tcGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCgctg > 2:706807/1‑90 (MQ=255) tcGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCgctg > 2:687660/1‑90 (MQ=255) ggCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCgg < 1:32364/90‑1 (MQ=255) cTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATatgccgatacatcgctaagcaaaaccagtgccagcgagatataaagc > 2:199082‑M2/1‑43 (MQ=255) cTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCAt < 2:461335/90‑1 (MQ=255) cTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCAt < 2:78447/90‑1 (MQ=255) tGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCAtg < 2:615493/90‑1 (MQ=255) ggTTTTGCTTAGCGATGTATCGGCATatttttctaactctaatgccgatacatcgctaagcaaaaccagtgccagcgagatataaagcaa > 1:382499‑M1/1‑26 (MQ=255) ggTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCAtgt > 2:323020/1‑90 (MQ=255) ggTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCAtgt < 2:132030/90‑1 (MQ=255) gTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCAtgtg < 2:642775/90‑1 (MQ=255) aGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCATGTGGGTTAtgtg > 2:301336/1‑90 (MQ=255) gCGATGTATCGGCATTAGAGTTAGAAAAATatgccgatacatcgctaagcaaaaccagtgccagcgagatataaagcaacgtggtaacgc < 1:172145‑M2/90‑61 (MQ=255) cGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCATGTGGGTTATGTGAt < 2:559259/90‑1 (MQ=255) | CACGGGCGTTTCTGGTGGCGATTGGCGTTACCACGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCATGTGGGTTATGTGAT > NZ_CP009273/508711‑508870 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |