| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 15391 = | NA (NA) | 18 (0.900) | 16/162 | 0.2 | 90.4% | intergenic (+93/‑54) | dnaJ/BW25113_RS00080 | molecular chaperone DnaJ/IS4‑like element IS421 family transposase |
| ? | NZ_CP009273 | = 454255 | 2 (0.100) | intergenic (+99/‑89) | clpX/lon | ATP‑dependent protease ATP‑binding subunit ClpX/endopeptidase La | |||||
AGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCA > NZ_CP009273/15309‑15474 | aGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAgcgc < 1:130998/90‑1 (MQ=255)aGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAgcgc < 2:442887/90‑1 (MQ=255) ccTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTa < 1:219805/90‑1 (MQ=255) ccTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTa < 1:62238/90‑1 (MQ=255) cGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTaa < 1:253097/90‑1 (MQ=255) tGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGGACTCCCCCAAGCGCTCACtttaag > 2:549501/1‑86 (MQ=255) ggCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTtgtg < 2:357165/90‑1 (MQ=255) ggCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTtgcg < 2:493947/90‑3 (MQ=255) gggTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTAtt < 1:20712/90‑1 (MQ=255) aaaTAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGGACTCCCCAAAGAGCTGACTTTAAGGGTGTGGTATTACAccc > 1:326674/1‑89 (MQ=255) aGGGTGCGTTGAAGATATGCGAGCCCCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGata < 2:394829/90‑1 (MQ=255) gCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTTACTCCCCTAAACGCTAAATTAAAGGGTGTGGGGTTTTGCCTGgtattttt > 2:140087/1‑86 (MQ=255) gCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAACGCTAACTTAAGGGTTGTGGTATTACGCCTGATattatt > 1:416608/1‑90 (MQ=255) atGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAATCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGa < 1:106876/90‑1 (MQ=255) gAGCACCTGTAAAGTGGCGGGGGTCACTCCCCCAAGCGCTAAATTTAAGGGTGGGGGGTTTCGCCTGATATTATTTTAAGTGGCGGTGaa > 2:103587/1‑90 (MQ=255) gCACCTGTAAAGTGGCGGGGGTCACTCCCATAAACGCTAACTTTAGGGGTGGGGGATTACGCCTGGTATGATTTTACGTGCCGATGAAtt > 1:216120/1‑90 (MQ=18) cTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActc < 1:129543/90‑1 (MQ=255) cTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActc < 1:140087/90‑1 (MQ=255) tGTAAAGTGGCGGGGGTCACTCCCCTAAACGCCAACTTTAGGGGTGTGGGATTTAGCCCGATATTATTTTAAATGGCCATGAAATAatct > 2:108847/1‑90 (MQ=255) tAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCa < 1:479424/90‑1 (MQ=255) aCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCa < 2:289296/90‑1 (MQ=32) | AGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCA > NZ_CP009273/15309‑15474 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |