| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 15391 = | NA (NA) | 18 (0.900) | 16/162 | 0.2 | 90.4% | intergenic (+93/‑54) | dnaJ/BW25113_RS00080 | molecular chaperone DnaJ/IS4‑like element IS421 family transposase |
| ? | NZ_CP009273 | = 454255 | 2 (0.100) | intergenic (+99/‑89) | clpX/lon | ATP‑dependent protease ATP‑binding subunit ClpX/endopeptidase La | |||||
CCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCT > NZ_CP009273/454167‑454343 | aacgcgaggcatcgtcttaacgaggcaccgaggtgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGGAAACATcccc > 1:454388‑M1/77‑90 (MQ=255) acgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGGAAACATccc < 2:533771‑M1/13‑1 (MQ=255) acgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGGAAACATccc > 1:533771‑M1/76‑88 (MQ=255) acgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGGAAACATCCCCa > 2:112776‑M1/76‑90 (MQ=255) gcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGGAAACATCCCCata < 2:71835‑M1/17‑1 (MQ=255) tAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgcta > 2:360156‑M2/1‑80 (MQ=255) tAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgcta > 2:336073‑M2/1‑80 (MQ=255) tAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgcta > 1:252854‑M2/1‑80 (MQ=255) tAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaactt < 2:539302‑M2/90‑15 (MQ=255) aCCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaa < 1:288997‑M2/90‑17 (MQ=255) aCCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaa > 1:121812‑M2/1‑74 (MQ=255) ccAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaag > 2:163469‑M2/1‑73 (MQ=255) cAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagg > 2:533960‑M2/1‑72 (MQ=255) aacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGt > 1:166542‑M1/59‑90 (MQ=255) aGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgt > 2:250619‑M2/1‑67 (MQ=255) accgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGAt > 1:323025‑M1/51‑90 (MQ=255) ccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATg < 2:27368‑M1/41‑1 (MQ=255) gATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgtggtatt > 1:332159‑M2/1‑61 (MQ=255) ggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGt > 2:392053‑M1/46‑90 (MQ=255) tcCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGGGGGGGAAACATCCCataagcgctaacttaagggttgtggtattaggcctgat < 1:580606‑M2/90‑39 (MQ=255) ccccTTTAATTTTTCCTCTATCCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgtggtattacgcctgata > 2:297496‑M2/1‑51 (MQ=255) ttcttcagatggttcaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAg > 2:350480‑M1/37‑90 (MQ=255) ccTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgtggtattacgcctgatatg < 1:565047‑M2/90‑42 (MQ=255) cTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgtggtattacgcctgatatga < 2:494061‑M2/90‑43 (MQ=255) gatggttcaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTc > 1:71835‑M1/30‑90 (MQ=255) atggttcaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATCTTAATAGATGGCGTGAAGCACAGTCGTGTCa > 1:453707‑M1/29‑90 (MQ=255) tggttcaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCAt > 2:139532‑M1/28‑90 (MQ=255) cttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCt > 1:412723‑M1/18‑90 (MQ=255) ttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTAc < 2:208443‑M1/28‑1 (MQ=255) ttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTAc > 1:208443‑M1/17‑44 (MQ=255) cGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgtggtattacgcct > 1:357432‑M2/1‑27 (MQ=255) cGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgtggtattacgcct < 2:357432‑M2/62‑36 (MQ=255) gttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCgg > 1:268390‑M1/13‑90 (MQ=255) tagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGaa < 1:370197‑M1/80‑1 (MQ=255) gAATGTGGGGGAAACATCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacg < 1:427071‑M2/90‑71 (MQ=255) cgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAAtt > 1:76928‑M1/8‑90 (MQ=255) aaCATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAagagag < 2:45604/90‑1 (MQ=255) cATCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagca < 1:380858‑M2/90‑85 (MQ=255) tCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaat < 2:442844‑M2/90‑87 (MQ=255) ccccATATACTGACGTACTTGTTAATAGATGGGGTGAAGCACAGCCGTGTAATCTGTTTCCCTGGGGGAAATTAAACTAagggagagttt > 2:184293/1‑87 (MQ=255) ccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattc > 2:150776‑M2/1‑2 (MQ=255) ccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattc > 2:371706‑M2/1‑2 (MQ=255) ccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattc > 1:526340‑M2/1‑2 (MQ=255) ccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattc > 1:286737‑M2/1‑2 (MQ=255) | CCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCT > NZ_CP009273/454167‑454343 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |