| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 73 (3.940) | 32/168 | 0.0 | NA | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | NA (NA) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
TGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCC > NZ_CP009273/360022‑360193 | tGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTg > 2:497159/1‑90 (MQ=255)tGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTg > 2:418125/1‑90 (MQ=255) ccAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGc < 1:75286/90‑1 (MQ=255) ccAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGc < 2:249604/90‑1 (MQ=255) gCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGt > 2:430891/1‑90 (MQ=255) cAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGt > 1:333042/1‑90 (MQ=255) cAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGt > 1:511061/1‑90 (MQ=255) gcgcCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGTcc < 1:496657/90‑1 (MQ=255) ccaccaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGGCCtcc > 2:73564/1‑88 (MQ=255) accaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGGGgcccg‑ccc > 2:64319/1‑90 (MQ=255) tCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCa < 1:181387/90‑1 (MQ=255) tCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCa < 1:29052/90‑1 (MQ=255) cAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCAcc < 2:115881/90‑1 (MQ=255) gTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGGGGCCCG‑ccccccccccc > 1:14101/1‑89 (MQ=255) gTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGGCCCG‑ccccccccccc > 1:127671/1‑89 (MQ=39) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCCCCCTcc < 1:497159/90‑1 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGGCCTG‑Ccccccccccccc > 2:159828/1‑90 (MQ=38) ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCt > 2:224834/1‑51 (MQ=255) ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCt < 1:224834/51‑1 (MQ=255) gCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGGCCTG‑CCCCCCCCCCCCCCGGCCg > 2:96222/1‑90 (MQ=37) cTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCACCCTCCGGGCCGt < 2:173619/90‑1 (MQ=255) cTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCACCCTCCGGGCCGt < 1:398150/90‑1 (MQ=255) cTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCACCCTCCGGGCCGt < 2:333042/90‑1 (MQ=255) tCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGGGGCCCGCCCCCCCCCCCCCCGGGccct > 2:296982/1‑88 (MQ=255) tCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGGGGCCCG‑CCCCCCCCCCCCCCGGcccgt > 2:371641/1‑87 (MQ=255) tCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGGCCTC‑CCCCCCCCCCCCCCGGCCggt > 2:420136/1‑88 (MQ=37) gatgatAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGGGGCCCG‑CCCCCCCCCCCCCCCGCCgctgct > 1:222803/1‑90 (MQ=255) tAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGGGGCCTG‑CCCCCCCCCCCCCCCGCCCGTGCTTTGcc > 1:133499/1‑89 (MQ=25) aaGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCaa < 2:511061/90‑1 (MQ=255) gTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGGCCCTC‑CCCCCCCCCCCCCCGCCCGTT‑CTTCGCCACCTTc > 1:297280/1‑90 (MQ=255) gTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGGGGCCTG‑CCCCCCCCCCCCCCGGCCGCTGGTTTTCCACGTTc > 1:170066/1‑90 (MQ=21) gTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGGCCTG‑CCCCCCCCCCCCCCCGCCGCTGCTTCTCAACGTTc > 1:46577/1‑90 (MQ=21) aTGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGGGGCCCG‑CCCCCCCCCCCCCCCGCCCCTGGTTCTCCACCTTCAAATccc > 1:274442/1‑89 (MQ=16) tGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGc < 2:416920/90‑1 (MQ=255) tGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGc < 1:371641/90‑1 (MQ=255) tGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGGCCCC‑CCCCCCCCCCCCCCCGCCCCTGCTTCCCCACCCTCAAAAcccc > 1:40725/1‑88 (MQ=255) tCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcggc < 1:139618/90‑1 (MQ=255) tCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcggc < 1:520240/90‑1 (MQ=255) tCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcggc < 2:274442/90‑1 (MQ=255) tCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcggc < 2:222803/90‑1 (MQ=255) tCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcggc < 1:105028/90‑1 (MQ=255) ccGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGGCCCG‑CCCGCCCCCCCCCCGGCCGGTGCTTCGCAAAGTTCAAAACCCCTccccggg > 2:82756/1‑86 (MQ=14) gATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCCCCCCCCCGGCCGTTGCTTCGCAACGTTCAAATCCCCTCCccgcggg > 2:19027/1‑89 (MQ=14) tCCCCAATTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt < 1:418125/90‑1 (MQ=255) tCCCCAATTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt < 2:229530/90‑1 (MQ=255) tCCCCAATTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt < 2:509724/90‑1 (MQ=255) tCCCCAATTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt < 1:442427/90‑1 (MQ=255) cccccAATTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt < 1:251647/89‑1 (MQ=255) ccAATTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGt < 1:221547/90‑1 (MQ=38) ccAATTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGt < 1:379209/90‑1 (MQ=38) aaTTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:365242/90‑1 (MQ=25) aaTTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:477219/90‑1 (MQ=25) aaTTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTgaac < 1:159828/90‑4 (MQ=25) aaTTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:340940/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:170066/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:9144/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:110341/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:527854/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:500964/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:139525/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:40725/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:406563/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:477276/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:76346/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:15393/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:180402/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:307935/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGC‑GGGCGCCCTG‑CCCGCCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:353242/90‑1 (MQ=255) aaTTCCTGGCAGTTTATGGC‑GGGCGCCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:207171/90‑1 (MQ=25) | TGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCC > NZ_CP009273/360022‑360193 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |