New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NZ_CP009273 | = 2688401 | 39 (0.820) | 5 (0.100) +GCCCT |
3/138 | 3.8 | 11.0% | coding (502/3888 nt) | purL | phosphoribosylformylglycinamidine synthase |
? | NZ_CP009273 | 2688402 = | 42 (0.790) | coding (501/3888 nt) | purL | phosphoribosylformylglycinamidine synthase | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
GTGAAAGCATCCTGCAGATAGTCAATTTCATCTTCCGCCAGAGCCAAGCCAAGACGCAGGTTAGCGTCGATCAGCGCCTGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/2688319‑2688401 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCTGCCCCAGCAAATCAACGCTGGTAACCGGAGTCGGTTGATGGTGGGCAAACAACTGCTCTGCATCA > NZ_CP009273/2688402‑2688471 ||||| GTGAAAGCATCCTGCAGATAGTCAATTTCATCTTCCGCCAGAGCCAAGCCAAGACGCAGGTTAGCGTCGATCAGCGCCTGACGGCCCTGC > 2:1570345/1‑90 TGAAAGCATCCTGCAGATAGTCAATTTCATCTTCCGCCAGAGCCAAGCCAAGACGCAGGTTAGCGTCGATCAGCGCCTGACGGCCCTGCC < 2:926098/90‑1 TCTTCCGCCAGAGCCAAGCCAAGACGCAGGTTAGCGTCGATCAGCGCCTGACGGCCCTGCCCTGCCCCAGCAAATCAACGCTGGTAACCG > 1:1575214/1‑90 GCCAGAGCCAAGCCAAGACGCAGGTTAGCGTCGATCAGCGCCTGACGGCCCTGCCCTGCCCCAGCAAATCAACGCTGGTAACCGGAGTCG < 2:1575214/90‑1 GATCAGCGCCTGACGGCCCTGCCCTGCCCCAGCAAATCAACGCTGGTAACCGGAGTCGGTTGATGGTGGGCAAACAACTGCTCTGCATCA > 1:159346/1‑90 ||||| GTGAAAGCATCCTGCAGATAGTCAATTTCATCTTCCGCCAGAGCCAAGCCAAGACGCAGGTTAGCGTCGATCAGCGCCTGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/2688319‑2688401 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCTGCCCCAGCAAATCAACGCTGGTAACCGGAGTCGGTTGATGGTGGGCAAACAACTGCTCTGCATCA > NZ_CP009273/2688402‑2688471 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |